Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq572 159 3e-34 seq356 84.2 2e-11 >seq572 Length=609512 Score = 159 bits (176), Expect = 3e-34 Identities = 733/1142 (64%), Gaps = 37/1142 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 || || || || |||||||| || || ||||| | | || | ||| ||| | ||| Sbjct 16773 TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGC 16832 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| || || || | |||| || ||||||||| || || Sbjct 16833 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 16892 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || |||| ||||| | | ||| | ||||||| || | ||| ||||| Sbjct 16893 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAG 16952 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | |||||| | || |||||||||||||||||||| | || | | || | Sbjct 16953 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAG 17012 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190 || || |||| | |||| | || || || |||| | |||| | || || || | Sbjct 17013 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATG-GTC-AGAG 17070 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTC 147248 | | | ||| ||||| ||| ||| | ||||| || |||| || || ||| Sbjct 17071 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG--GCCTCGGGAGACTC 17128 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | ||||||| || || | || ||||| || | |||||||| ||||| || || || Sbjct 17129 GAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATGGG 17188 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCG-CTC-GCTATGGGATAGTGGTTGCGATCAATA 147366 || || |||||| | | || | ||| | | ||| ||||||||| |||||| Sbjct 17189 GCGGTGACGCATGTTGCT--GTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATG 17246 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA- 147425 |||||||| | ||| || || || || | ||| | | || |||| ||| || || Sbjct 17247 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCGTAG 17306 Query 147426 AGTCC--CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483 | || ||| | | || ||| | | || || | || |||| |||||||| Sbjct 17307 ACACCATCGTTGTAGTCA---ACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACA 17363 Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543 || ||| |||| ||| ||||| | ||| || | ||| |||||| || || Sbjct 17364 GCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATA 17423 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 ||| | || | ||| ||||| || || ||| || || ||| | |||||| | || Sbjct 17424 GTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGG 17483 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660 ||| |||||| || | || | ||| | ||| | || | ||| || | Sbjct 17484 TTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAA---AGCTTCTGGGCCTTGATG 17540 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || ||| ||||||| |||||| ||||||||| ||| ||||| |||||| Sbjct 17541 GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCG 17600 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780 ||||| || || ||||| || |||| || || ||||| || | ||| | ||| | Sbjct 17601 TAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTC 17660 Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840 | || | ||| |||||||| || | ||| || ||| | ||| || || || | Sbjct 17661 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGG 17720 Query 147841 CAATCCTCGGCGCCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGT 147895 ||||| | ||||| ||||| ||| | | | || | | ||| |||||||| Sbjct 17721 ACCTCCTCCTTG-CCATGGTTCTTGCG---CAAGTCCATGAACTCGA-AGACGTCGGCGT 17775 Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACAT 147952 ||||||| |||| ||||| || | || || |||| || || ||||| ||||| | Sbjct 17776 GCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACGT 17835 Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012 ||| | |||||||||| || || | |||||| | ||| ||| |||||||||| Sbjct 17836 AGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGG 17895 Query 148013 TG 148014 || Sbjct 17896 TG 17897 >seq356 Length=254992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | |||| || || || || ||||||||||||| || || |||||| Sbjct 83746 ACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCC 83805 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | |||| |||||||| || || ||||| || || || || || Sbjct 83806 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 83865 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || || | | ||| ||||| | ||| | ||| || Sbjct 83866 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTT 83925 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | ||| |||||||| Sbjct 83926 CCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605665352440