Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq572 159 3e-34
seq356 84.2 2e-11
>seq572
Length=609512
Score = 159 bits (176), Expect = 3e-34
Identities = 733/1142 (64%), Gaps = 37/1142 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
|| || || || |||||||| || || ||||| | | || | ||| ||| | |||
Sbjct 16773 TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGC 16832
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || |||| || ||||| || || || | |||| || ||||||||| || ||
Sbjct 16833 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 16892
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| ||| || |||| ||||| | | ||| | ||||||| || | ||| |||||
Sbjct 16893 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAG 16952
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132
| |||||| | || |||||||||||||||||||| | || | | || |
Sbjct 16953 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAG 17012
Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190
|| || |||| | |||| | || || || |||| | |||| | || || || |
Sbjct 17013 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATG-GTC-AGAG 17070
Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTC 147248
| | | ||| ||||| ||| ||| | ||||| || |||| || || |||
Sbjct 17071 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG--GCCTCGGGAGACTC 17128
Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308
| ||||||| || || | || ||||| || | |||||||| ||||| || || ||
Sbjct 17129 GAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATGGG 17188
Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCG-CTC-GCTATGGGATAGTGGTTGCGATCAATA 147366
|| || |||||| | | || | ||| | | ||| ||||||||| ||||||
Sbjct 17189 GCGGTGACGCATGTTGCT--GTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATG 17246
Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA- 147425
|||||||| | ||| || || || || | ||| | | || |||| ||| || ||
Sbjct 17247 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCGTAG 17306
Query 147426 AGTCC--CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483
| || ||| | | || ||| | | || || | || |||| ||||||||
Sbjct 17307 ACACCATCGTTGTAGTCA---ACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACA 17363
Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543
|| ||| |||| ||| ||||| | ||| || | ||| |||||| || ||
Sbjct 17364 GCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATA 17423
Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603
||| | || | ||| ||||| || || ||| || || ||| | |||||| | ||
Sbjct 17424 GTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGG 17483
Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660
||| |||||| || | || | ||| | ||| | || | ||| || |
Sbjct 17484 TTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAA---AGCTTCTGGGCCTTGATG 17540
Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720
|| ||| ||||||| |||||| ||||||||| ||| ||||| ||||||
Sbjct 17541 GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCG 17600
Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780
||||| || || ||||| || |||| || || ||||| || | ||| | ||| |
Sbjct 17601 TAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTC 17660
Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840
| || | ||| |||||||| || | ||| || ||| | ||| || || || |
Sbjct 17661 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGG 17720
Query 147841 CAATCCTCGGCGCCCATG----TTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGT 147895
||||| | ||||| ||||| ||| | | | || | | ||| ||||||||
Sbjct 17721 ACCTCCTCCTTG-CCATGGTTCTTGCG---CAAGTCCATGAACTCGA-AGACGTCGGCGT 17775
Query 147896 GCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACAT 147952
||||||| |||| ||||| || | || || |||| || || ||||| ||||| |
Sbjct 17776 GCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACGT 17835
Query 147953 GGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGG 148012
||| | |||||||||| || || | |||||| | ||| ||| ||||||||||
Sbjct 17836 AGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGG 17895
Query 148013 TG 148014
||
Sbjct 17896 TG 17897
>seq356
Length=254992
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||| ||| | | |||| || || || || ||||||||||||| || || ||||||
Sbjct 83746 ACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCC 83805
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
| ||| || || | |||| |||||||| || || ||||| || || || || ||
Sbjct 83806 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 83865
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || |||| | || | || || | | ||| ||||| | ||| | ||| ||
Sbjct 83866 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTT 83925
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|||||||| || || | ||| ||||||||
Sbjct 83926 CCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476605665352440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |