Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq230 150 2e-31 >seq230 Length=716270 Score = 150 bits (166), Expect = 2e-31 Identities = 351/534 (66%), Gaps = 49/534 (9%) Strand=Plus/Minus Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965 ||||||| | || || | |||||||||| ||||||||||||||| |||| | || Sbjct 622075 CCAGCTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGT 622016 Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025 || | | ||||| ||| || | | | || | ||||| || || |||| || Sbjct 622015 GCGTGAGGCTTCCCGGTACCAGGTCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGT 621956 Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085 ||||||| ||||||||||| || || || |||||||| | |||| |||||||| ||||| Sbjct 621955 AGCTGGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAACTGGC 621896 Query 147086 ACGAGAG---------------CTCCCCGT-----------------CGGCC-------- 147105 | ||| |||| ||| ||| | Sbjct 621895 AATGGAGGTGGCCCTTTGGCTTCTCCTCGTTTGCGGGCGTTGCGCCGCGGGCTCGCGGGT 621836 Query 147106 -----ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 ||||||||||| ||| | |||||||||||||| |||||||| ||||||| Sbjct 621835 ACGAGACGTAAAACTGCGCAAAC-ATGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCC 621777 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCG 147219 || ||||||||||| | | | || | | | |||||| |||| | || | | Sbjct 621776 GCTGGGTTCCAGGCGCTAAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGG 621717 Query 147220 ATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTAC 147279 || ||| ||| ||||| |||||||||||| ||| | ||| | |||| |||||| Sbjct 621716 ATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTAC 621657 Query 147280 CTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG 147339 ||| |||||||| | ||| |||||||||||||| || || ||||| ||| | | | Sbjct 621656 TCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGACCGAGGTCACCGACTTCGCGG 621597 Query 147340 TGCGAGAAGCCCG-CCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || || ||| ||| | | | ||| |||||| | || || | | |||||||||| Sbjct 621596 TGGGA-AAGACCGACGCTGTCGAGGAACTCGCGCGATCCATTGCCGTCCCAGAT 621544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583481224245600