Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq230 150 2e-31
>seq230
Length=716270
Score = 150 bits (166), Expect = 2e-31
Identities = 351/534 (66%), Gaps = 49/534 (9%)
Strand=Plus/Minus
Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965
||||||| | || || | |||||||||| ||||||||||||||| |||| | ||
Sbjct 622075 CCAGCTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGT 622016
Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025
|| | | ||||| ||| || | | | || | ||||| || || |||| ||
Sbjct 622015 GCGTGAGGCTTCCCGGTACCAGGTCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGT 621956
Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085
||||||| ||||||||||| || || || |||||||| | |||| |||||||| |||||
Sbjct 621955 AGCTGGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAACTGGC 621896
Query 147086 ACGAGAG---------------CTCCCCGT-----------------CGGCC-------- 147105
| ||| |||| ||| ||| |
Sbjct 621895 AATGGAGGTGGCCCTTTGGCTTCTCCTCGTTTGCGGGCGTTGCGCCGCGGGCTCGCGGGT 621836
Query 147106 -----ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159
||||||||||| ||| | |||||||||||||| |||||||| |||||||
Sbjct 621835 ACGAGACGTAAAACTGCGCAAAC-ATGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCC 621777
Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCG 147219
|| ||||||||||| | | | || | | | |||||| |||| | || | |
Sbjct 621776 GCTGGGTTCCAGGCGCTAAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGG 621717
Query 147220 ATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTAC 147279
|| ||| ||| ||||| |||||||||||| ||| | ||| | |||| ||||||
Sbjct 621716 ATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTAC 621657
Query 147280 CTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTG 147339
||| |||||||| | ||| |||||||||||||| || || ||||| ||| | | |
Sbjct 621656 TCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGACCGAGGTCACCGACTTCGCGG 621597
Query 147340 TGCGAGAAGCCCG-CCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392
|| || ||| ||| | | | ||| |||||| | || || | | ||||||||||
Sbjct 621596 TGGGA-AAGACCGACGCTGTCGAGGAACTCGCGCGATCCATTGCCGTCCCAGAT 621544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583481224245600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |