Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq572 158 2e-32 seq686 145 1e-28 seq540 125 1e-22 >seq572 Length=609512 Score = 158 bits (174), Expect = 2e-32 Identities = 343/508 (68%), Gaps = 29/508 (6%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | |||||| ||||||| | ||| ||| ||||| |||| ||||| Sbjct 18310 CACAAGGAAGAGCTCGACTCTGCCATTGTCTACGACCGCGACTTCAACTACCAATACTTC 18251 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGC---GCGATATTGTCGTCGAG 259798 || | |||| || | || |||||| ||| | || | |||| || || Sbjct 18250 GGCTTCAAGACCCTGGAAAGATCATACCTGCTCAAGCTTGATGGCAAGATTGCCG---AG 18194 Query 259799 CGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGAC 259858 | |||||| | ||| |||||||||| || | ||| | |||| | || Sbjct 18193 AGACCCCAGCACATGATCATGCGTGTTGCAGTCGGCA--TCTGGGGT----------GAT 18146 Query 259859 AATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTC 259917 || | | |||| ||| ||| |||||| | |||||| ||||| ||| |||||| Sbjct 18145 AACG---TCGAGCGCGTCATCGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACCCA 18090 Query 259918 AGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTT 259974 || | ||||| ||||| || || || || || | ||| || | || || ||||| Sbjct 18089 CGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTG---TCTTCATGCTT 18033 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | |||||||||| || || || ||||| ||||| ||||| |||||| ||||| Sbjct 18032 CCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGC 17973 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 | ||||||||| ||| || ||||| ||| | ||| ||| | || ||| | || Sbjct 17972 CATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCCACTGG 17913 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154 | |||| | || |||||||||||| || ||||| | | ||||||||||| || || Sbjct 17912 CTCCTATATTGCAGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTT 17853 Query 260155 TAACGACACGGCGCGCTACGTCGACCAG 260182 |||| |||| || ||||||||||| ||| Sbjct 17852 TAACAACACTGCTCGCTACGTCGATCAG 17825 Score = 96.9 bits (106), Expect = 5e-14 Identities = 355/545 (65%), Gaps = 22/545 (4%) Strand=Plus/Minus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGAC-AGCATGGCCTGCGCAACTCGT 262933 || |||||| |||||| | ||| || | | | || | |||| || |||||||| | Sbjct 16955 CCTCTGGGATTGGGACTCTCTGAAGGAG-CAGATCAAGGAGCACGGTGTGCGCAACAGTT 16897 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||||| || | |||||| || ||| | || ||||||||| ||||||||| |||| | Sbjct 16896 TGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCT 16837 Query 262994 TCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTG 263052 ||||| ||| ||| |||||||||| || || || || | ||||| || || Sbjct 16836 TCGAGC-CATACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGAGTTCCAGGTT 16778 Query 263053 GTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGC 263112 || |||| | || | ||| | || | ||||||||| | | | | Sbjct 16777 GTTAACCCCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAG 16718 Query 263113 GACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCC 263172 |||| |||| || | | || || | ||| | | | || | |||| Sbjct 16717 AACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACAT-----TCCCGCT- 16664 Query 263173 GATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGAT--- 263229 || |||||||||| | ||||||||| |||||| | || | || ||| ||| | Sbjct 16663 GAGGTCAAGGCTCTGTACAAGACCGTCTGGGAGATATCCCAGCGC---ACCGTTGTTCAG 16607 Query 263230 ATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCC 263289 ||||| |||||||| | ||| |||||||| |||||| || ||| | || | Sbjct 16606 ATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACATGAAG 16547 Query 263290 GACCCGAC---GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTC 263346 |||||||| || | ||| || || || |||||| | | ||| | || ||| Sbjct 16546 GACCCGACAATGGGCAAGATCACCA-GT--ATGCACTTCGCCGGCTGGAAGCTTGGTCTC 16490 Query 263347 AAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 ||||| ||||||||||| ||||| || | | | ||| | | | ||||| ||||||||| Sbjct 16489 AAGACGGGCATGTACTACCTGCGTACGCAGGCAGCTTCTGCCCCTATTCAGTTCACCGTC 16430 Query 263407 GATCA 263411 || || Sbjct 16429 GACCA 16425 >seq686 Length=266282 Score = 145 bits (160), Expect = 1e-28 Identities = 240/340 (71%), Gaps = 15/340 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||||||||||||| | || | Sbjct 149381 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 149323 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| | | | ||| || ||| | ||| Sbjct 149322 TCTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGATGATGAGAAGTACTTC 149267 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | || ||||| || |||||| || || ||||| ||||||||| | Sbjct 149266 ATCTCTCACATTCTTGCCTTCTT-CGCCGCATCGGACGGTATCGTCAACGAGAACCTCGT 149208 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| |||||||| | || ||||| || | || ||||| |||||||| Sbjct 149207 CGAGCGCTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 149148 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || |||||||||||||| |||||||| ||||| |||||||||||| ||||||| Sbjct 149147 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 149088 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106 || | || | ||| ||||||| |||||| ||||| Sbjct 149087 GCCCG-CGCAGCGCACCTACCTCTTCAACGCCATTGACAC 149049 Score = 105 bits (116), Expect = 1e-16 Identities = 118/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 || ||||| |||||||| |||||||||||| | | ||| | || | ||| ||| ||| Sbjct 148979 AAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAAC-TCCTC-CTTCGCCCAGC 148922 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | ||||||||| || ||||| ||||| ||| || ||| | |||||| Sbjct 148921 GTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCT 148862 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||||| || |||||||| ||||| Sbjct 148861 TTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCT 148828 Score = 100 bits (110), Expect = 4e-15 Identities = 156/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||||| || |||||| |||| ||| | ||||| ||| ||| | ||||| || Sbjct 148718 ATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCT 148659 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| | | ||| |||||||||| | || || |||||||||| Sbjct 148658 CTTCTCGGCATGAACTCCAAC-TTGATGAAGCAGTACATTG-AGTTCGTTGCCGACCGCC 148601 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| | || ||| |||| | | ||||||| ||| | ||| Sbjct 148600 TCCTGGTCGCTCTTGGCAAC-GACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATG 148542 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||| ||||| || | |||||||||||||| || ||| Sbjct 148541 GAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAG 148503 >seq540 Length=221612 Score = 125 bits (138), Expect = 1e-22 Identities = 176/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| ||||| || | |||| |||||||| || || |||||| | |||||||| | Sbjct 151867 CGTCGGTGAGTCGGGCGTAGCGGAGGATGGCGCATCGTGACTGCAGCGGCTCGATGATCT 151808 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | ||| ||||||||| | ||| || |||||||| |||| | ||||||| ||| Sbjct 151807 TGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAAATTTCCATTGTCC 151748 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 || || |||||||| || | | || | || |||||||||||| ||||||| || || Sbjct 151747 GGCGCAGAGCCTGTTGAGCGCCTGATGTCATGCTGTCGGCCTCGTCAAGGATGACGAGCT 151688 Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCA 333095 ||||||| || || ||||| ||| | ||| ||| | |||||| ||||| | Sbjct 151687 TGTGGCGGCCCTGGGGCAGGGTGACCTTCTTCTGCGCGAAGCCCTTGATGCGGTTGCGAA 151628 Query 333096 CGACGTC 333102 ||||||| Sbjct 151627 CGACGTC 151621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177721596242498