Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq356 107 2e-18
seq477 96.9 3e-15
seq863 95.1 1e-14
>seq356
Length=254992
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| |||||||||||||| | || ||| || | || || |||||||| || || ||
Sbjct 83991 CTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAA 84050
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||||| | |||||| || |||||| ||| | ||
Sbjct 84051 GATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA-CGT 84109
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| ||||| ||||| | ||| ||||| || || || | || || |
Sbjct 84110 TGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGA 84169
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 84170 CGAAAATCTGCAT 84182
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || || ||||| ||| ||| || || | || |||| |||||| || || ||
Sbjct 83764 TCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAG 83823
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | ||||||||||| | ||| | | |||||||||| |||||| ||||| |
Sbjct 83824 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTA 83883
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||| || || || |||| ||| ||||| || || |||| || || ||
Sbjct 83884 TCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACG 83943
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 83944 AAGATCTGCAT 83954
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || | ||| |||||| ||||||||||| ||||
Sbjct 84470 CCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 84529
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || |||||||| || || || || | |||||||| || | ||
Sbjct 84530 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 84589
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660
| || |||||||||| |||||| |||||
Sbjct 84590 ATGCCCTCCTTGTCCTGGATCTTGGACTTCA 84620
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| || ||| || | || || || ||||| || |||||
Sbjct 84219 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 84278
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
||||| ||||||||||| | || | || |||||| ||| |||||
Sbjct 84279 GATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTT 84326
>seq477
Length=261965
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | ||| || | || || |||||||| || || || |
Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||| | || | || |||||||||| |||||| ||| | | |
Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||||| || || ||||| | || || || |||||||||| || ||||| |
Sbjct 234331 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 234390
Query 35727 A 35727
|
Sbjct 234391 A 234391
>seq863
Length=517823
Score = 95.1 bits (104), Expect = 1e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631
||| || |||| || |||||||| || || || |||| ||||||||||| | || |
Sbjct 7423 GGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGAT 7364
Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691
|| |||||||||| |||||| ||| | | | | | |||||| ||| ||||||||
Sbjct 7363 GCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTC 7304
Query 35692 CACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| ||||| || || ||||||| || || || || ||||||||
Sbjct 7303 AAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 7259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450788365159320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |