Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq356 107 2e-18 seq477 96.9 3e-15 seq863 95.1 1e-14 >seq356 Length=254992 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| | || ||| || | || || |||||||| || || || Sbjct 83991 CTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAA 84050 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| | |||||| || |||||| ||| | || Sbjct 84051 GATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA-CGT 84109 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||||| ||||| | ||| ||||| || || || | || || | Sbjct 84110 TGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGA 84169 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 84170 CGAAAATCTGCAT 84182 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || ||||| ||| ||| || || | || |||| |||||| || || || Sbjct 83764 TCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAG 83823 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||| | | |||||||||| |||||| ||||| | Sbjct 83824 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTA 83883 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || || |||| ||| ||||| || || |||| || || || Sbjct 83884 TCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACG 83943 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 83944 AAGATCTGCAT 83954 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| |||||| ||||||||||| |||| Sbjct 84470 CCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 84529 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || |||||||| || || || || | |||||||| || | || Sbjct 84530 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 84589 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660 | || |||||||||| |||||| ||||| Sbjct 84590 ATGCCCTCCTTGTCCTGGATCTTGGACTTCA 84620 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| || ||| || | || || || ||||| || ||||| Sbjct 84219 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 84278 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| ||||||||||| | || | || |||||| ||| ||||| Sbjct 84279 GATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTT 84326 >seq477 Length=261965 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || | || || |||||||| || || || | Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||||| || || ||||| | || || || |||||||||| || ||||| | Sbjct 234331 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 234390 Query 35727 A 35727 | Sbjct 234391 A 234391 >seq863 Length=517823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631 ||| || |||| || |||||||| || || || |||| ||||||||||| | || | Sbjct 7423 GGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGAT 7364 Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691 || |||||||||| |||||| ||| | | | | | |||||| ||| |||||||| Sbjct 7363 GCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTC 7304 Query 35692 CACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| || || ||||||| || || || || |||||||| Sbjct 7303 AAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 7259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788365159320