Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq686 93.3 6e-14
>seq686
Length=266282
Score = 93.3 bits (102), Expect = 6e-14
Identities = 147/210 (70%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||| ||||| || || ||||| || | || | ||||| || || || ||
Sbjct 148770 GCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAG 148829
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|||||||| ||||||||||| ||||||||||| |||| ||||||| || |||||
Sbjct 148830 ACCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAA 148889
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATG 39792
||| || || || || ||||| ||||| || | || || | | | ||||
Sbjct 148890 GATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCT 148949
Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTT 39822
||||||||| | ||||| ||||| |||||
Sbjct 148950 GATCCACTTCAGGGCCCAGTCAGCCTTCTT 148979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686900823271560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |