Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq347 96.9 3e-15
>seq347
Length=494420
Score = 96.9 bits (106), Expect = 3e-15
Identities = 303/468 (65%), Gaps = 11/468 (2%)
Strand=Plus/Plus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||| | || |||||||| | | || || | ||| |||||||| ||||| ||
Sbjct 415179 CCCAAGATTATCAACGGTCCTGAGGTTCTCAACAAGTTTGTCGGTCAATCTGAAGAGAAC 415238
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547
| ||| ||||||| || ||||| |||| | | || | |||||| | | |||
Sbjct 415239 ATTCGAAAGATGTTTGCGGATGCTGA-GAAGGAGTACAAGGAGAAGGGCGACCAGAGTGG 415297
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607
| | |||||||| || | ||||| ||||| || |||| ||||||||||| || ||||
Sbjct 415298 TCTTCACATTATCATTTTCGATGAGTTGGATGCCGTCTGCAAGCAAAGAGGCTCCGGTGC 415357
Query 19608 A---------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658
| ||| || ||||| |||||| || || || || | || | |||||
Sbjct 415358 CGGCGGCGGCACTGGTGTTGGTGACAGTGTTGTTAACCAGCTTCTCACCAAGCTCGACGG 415417
Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718
|||| |||| || || || || | | || || ||||| || | || | || ||
Sbjct 415418 TGTTGACCAGCTTAACAACATCCTCCTCATCGGTATGACCAACCGTAAAGATATGATCGA 415477
Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778
|| | | || |||||||| ||||| | || | || || | ||| ||| | ||
Sbjct 415478 TGAGGCGCTTCTGCGTCCCGGTCGTTTGGAGGTTCAGTTGGAGATCAGCTTGCCCAACGA 415537
Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTT 19838
| ||||| |||||| || | || || || | | |||||| | || ||| || |
Sbjct 415538 AGAGGGACGCAAGGAAATCTTCATGATCCACACTGCCAAGATGCGAGACAACAACATTAT 415597
Query 19839 AAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTA 19886
|| | | || || || | | | ||||| |||||||||||
Sbjct 415598 GGATTCCAAAGTTGACCTGGCCTCACTGGCAGCTCGCACCAAAAACTA 415645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397451499928645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |