Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq347 96.9 3e-15 >seq347 Length=494420 Score = 96.9 bits (106), Expect = 3e-15 Identities = 303/468 (65%), Gaps = 11/468 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || |||||||| | | || || | ||| |||||||| ||||| || Sbjct 415179 CCCAAGATTATCAACGGTCCTGAGGTTCTCAACAAGTTTGTCGGTCAATCTGAAGAGAAC 415238 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| ||||||| || ||||| |||| | | || | |||||| | | ||| Sbjct 415239 ATTCGAAAGATGTTTGCGGATGCTGA-GAAGGAGTACAAGGAGAAGGGCGACCAGAGTGG 415297 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607 | | |||||||| || | ||||| ||||| || |||| ||||||||||| || |||| Sbjct 415298 TCTTCACATTATCATTTTCGATGAGTTGGATGCCGTCTGCAAGCAAAGAGGCTCCGGTGC 415357 Query 19608 A---------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 | ||| || ||||| |||||| || || || || | || | ||||| Sbjct 415358 CGGCGGCGGCACTGGTGTTGGTGACAGTGTTGTTAACCAGCTTCTCACCAAGCTCGACGG 415417 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 |||| |||| || || || || | | || || ||||| || | || | || || Sbjct 415418 TGTTGACCAGCTTAACAACATCCTCCTCATCGGTATGACCAACCGTAAAGATATGATCGA 415477 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || | | || |||||||| ||||| | || | || || | ||| ||| | || Sbjct 415478 TGAGGCGCTTCTGCGTCCCGGTCGTTTGGAGGTTCAGTTGGAGATCAGCTTGCCCAACGA 415537 Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTT 19838 | ||||| |||||| || | || || || | | |||||| | || ||| || | Sbjct 415538 AGAGGGACGCAAGGAAATCTTCATGATCCACACTGCCAAGATGCGAGACAACAACATTAT 415597 Query 19839 AAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTA 19886 || | | || || || | | | ||||| ||||||||||| Sbjct 415598 GGATTCCAAAGTTGACCTGGCCTCACTGGCAGCTCGCACCAAAAACTA 415645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451499928645