Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq356 95.1 1e-14 >seq356 Length=254992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || || || |||||||||||||||| |||| | ||||| Sbjct 83746 ACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCC 83805 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| || || ||| | || |||||||| || || || || | |||||| || || | Sbjct 83806 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 83865 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | ||||| | | || ||||| | || || | || Sbjct 83866 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTT 83925 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || || || ||||| |||||| Sbjct 83926 CCAGTCAGCGTCTTGACGAAGATCTGCATA 83955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || ||||| ||||||||| | | |||| |||| ||| Sbjct 84488 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 84547 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| ||||||||||||| ||||| || || | ||||| || || | Sbjct 84548 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGG 84607 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | || || | || || || || ||||| || | ||| Sbjct 84608 ATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTTG 84667 Query 27219 CCCGT 27223 || || Sbjct 84668 CCGGT 84672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929588813048