Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq686 98.7 3e-15
seq572 91.5 5e-13
>seq686
Length=266282
Score = 98.7 bits (108), Expect = 3e-15
Identities = 122/166 (73%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
||||| | |||| || || || ||||| | || || || | || || ||||| ||||
Sbjct 148932 CTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGT-GCTT 148874
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| ||||||||||| ||| | || |||||||| || |||| ||||||||||| ||||
Sbjct 148873 TTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACG 148814
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864
| || ||| || ||||||||| | || |||||| ||||| ||
Sbjct 148813 AGCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCT 148768
>seq572
Length=609512
Score = 91.5 bits (100), Expect = 5e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037
|| || ||| | ||||| || |||||| ||||||||||||||||| || ||| |||
Sbjct 17872 ATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGATCAGGGTGGCAACAAG 17813
Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082
|| || || || ||| | |||||||| ||||| ||||||||||||
Sbjct 17812 CGTCCTGGCGCTTTCGCTATCTACCTTGAGCCCTGGCACGCCGAC 17768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588317094334405
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |