Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq686 98.7 3e-15 seq572 91.5 5e-13 >seq686 Length=266282 Score = 98.7 bits (108), Expect = 3e-15 Identities = 122/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| | |||| || || || ||||| | || || || | || || ||||| |||| Sbjct 148932 CTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGT-GCTT 148874 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||| ||| | || |||||||| || |||| ||||||||||| |||| Sbjct 148873 TTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACG 148814 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 | || ||| || ||||||||| | || |||||| ||||| || Sbjct 148813 AGCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCT 148768 >seq572 Length=609512 Score = 91.5 bits (100), Expect = 5e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| | ||||| || |||||| ||||||||||||||||| || ||| ||| Sbjct 17872 ATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGATCAGGGTGGCAACAAG 17813 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 || || || || ||| | |||||||| ||||| |||||||||||| Sbjct 17812 CGTCCTGGCGCTTTCGCTATCTACCTTGAGCCCTGGCACGCCGAC 17768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588317094334405