Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq686 114 2e-20 seq95 87.8 2e-12 >seq686 Length=266282 Score = 114 bits (126), Expect = 2e-20 Identities = 152/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| || ||||| || || || || |||||| ||||| Sbjct 148773 GGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACC 148832 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | |||| | || | | || | ||| ||||||||| Sbjct 148833 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGAT 148892 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 |||||| ||| ||||| |||| || || | |||||||||| || || |||| Sbjct 148893 ACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG---GAGTTCTCATCGCT 148949 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTT 122864 | ||| |||| ||||| | |||||||| Sbjct 148950 GATCCACTTCAGGGCCCAGTCAGCCTTCTT 148979 >seq95 Length=35920 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 || || |||||||| ||||||| || || || | | | |||||| || |||| || Sbjct 25607 GCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTTGCAAACAGG 25548 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747 || || || ||| | ||| ||||| ||||||||||| ||||| | | | || || | Sbjct 25547 TCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTGA-C 25489 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || || ||| || ||| || || || ||| |||| ||| || | ||||| || | Sbjct 25488 GCT-GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAATGTCTTACCGG 25430 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | ||||| || || |||| |||||| || |||||||| || || Sbjct 25429 TTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCC 25384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024706978400