Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq686 114 2e-20
seq95 87.8 2e-12
>seq686
Length=266282
Score = 114 bits (126), Expect = 2e-20
Identities = 152/210 (72%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || ||| |||||||| || ||||| || || || || |||||| |||||
Sbjct 148773 GGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACC 148832
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
||||||||||| |||||||| | |||| | || | | || | ||| |||||||||
Sbjct 148833 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGAT 148892
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834
|||||| ||| ||||| |||| || || | |||||||||| || || ||||
Sbjct 148893 ACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG---GAGTTCTCATCGCT 148949
Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTT 122864
| ||| |||| ||||| | ||||||||
Sbjct 148950 GATCCACTTCAGGGCCCAGTCAGCCTTCTT 148979
>seq95
Length=35920
Score = 87.8 bits (96), Expect = 2e-12
Identities = 157/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
|| || |||||||| ||||||| || || || | | | |||||| || |||| ||
Sbjct 25607 GCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTTGCAAACAGG 25548
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747
|| || || ||| | ||| ||||| ||||||||||| ||||| | | | || || |
Sbjct 25547 TCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTGA-C 25489
Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807
|| || ||| || ||| || || || ||| |||| ||| || | ||||| || |
Sbjct 25488 GCT-GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAATGTCTTACCGG 25430
Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853
| ||||| || || |||| |||||| || |||||||| || ||
Sbjct 25429 TTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCC 25384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628024706978400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |