Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq572 183 4e-41 seq686 132 6e-26 seq95 123 3e-23 >seq572 Length=609512 Score = 183 bits (202), Expect = 4e-41 Identities = 925/1456 (64%), Gaps = 45/1456 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| |||| ||||||||||| |||||||| ||||| |||||||| || | |||||| Sbjct 16812 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAG 16871 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || |||||||| || | ||| | ||||| || | ||| | ||| | || | ||| Sbjct 16872 GCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCC 16931 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 || |||| |||||| || || | | || | | |||||| || |||||||| Sbjct 16932 TTCAGAGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGG 16991 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 ||||| ||||| || || ||||| | || || | |||||| ||| |||| Sbjct 16992 ATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGC 17051 Query 118422 TCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 | || | | | | || || ||||| || || || || || || || | Sbjct 17052 T--GAACAGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGAT 17109 Query 118480 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 118539 | ||||||| || || || | | || | || |||| || ||||| | Sbjct 17110 CACGGGCCTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCT 17169 Query 118540 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGG 118596 |||||||||| ||||| ||||| || | ||| || || ||||| ||| |||| Sbjct 17170 GGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGG 17226 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 | || || ||| || | | | || | || || |||| |||| || | Sbjct 17227 GGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGT 17286 Query 118657 GAAGCTTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 ||||||| | | | || | | | || | | ||| || | | || || || Sbjct 17287 GAAGCTTCTGGAAGTCGTAGACACCATCGT-TGTAGTCAACGA---AGGTGGGCAGAGCA 17342 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 | || |||| || || |||| | ||| || | |||||| || || || ||| Sbjct 17343 AGGGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTG 17402 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 || | ||| || || || || || | |||||| || || ||| ||| ||| Sbjct 17403 CAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCA 17462 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 ||||||||||||||| | || | || ||||| || || | || ||| || || | ||| Sbjct 17463 TCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAA 17522 Query 118893 A-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTA 118948 | | || | || | ||| ||| | | ||||| ||||||||| ||| Sbjct 17523 AGCTTCTGGGCCTTGA----TGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTA 17578 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 | ||| || ||||| || || | || | || || || || || ||||| | Sbjct 17579 CAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACAT 17638 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | | || ||| || | ||||||||| || || ||||||||||| || Sbjct 17639 GAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGC 17698 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 ||| || || || || | || || | || || || ||||| |||| || Sbjct 17699 GAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAA 17758 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186 || | || || |||||||| || || ||||| | |||| | || | |||| Sbjct 17759 CTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCC---AGGACGCTT 17815 Query 119187 ----CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 ||| |||| | || || | |||||| |||||| ||||||||||| ||||||| Sbjct 17816 GTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGAC 17875 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 ||| | || ||| || || || |||| || | |||| | || | ||| Sbjct 17876 ACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGC 17935 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || | |||||| || || ||| ||| ||||| ||||| | |||| || |||| Sbjct 17936 GTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTA 17995 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 ||| || || || ||||| |||| | ||| ||||||||| |||| || | || Sbjct 17996 GATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACT 18054 Query 119423 G-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACAT 119479 | || ||||||||||||||||| || || | |||||| ||| | | |||| |||||| Sbjct 18055 GAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACAT 18112 Query 119480 CTTGTCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 119538 || ||||||||| | |||| || | | || || || || |||| | || | Sbjct 18113 GAGGTTGTAGGTCTCGATGACGCGCTCG-ACGTTATCACCCCAGATGCCGACTGCAACAC 18171 Query 119539 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA-ACTC 119597 |||| | ||||| |||||| | || | | ||||| ||| | | ||||| || Sbjct 18172 GCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATC 18231 Query 119598 TTCTCCAAGGTCTTGA 119613 || |||| |||||||| Sbjct 18232 TT-TCCAGGGTCTTGA 18246 >seq686 Length=266282 Score = 132 bits (146), Expect = 6e-26 Identities = 305/454 (67%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| | || |||||||| |||||||| ||||| ||| | | | ||| |||||||| Sbjct 148486 TAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 148545 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || || || ||||| || || | | || | | |||| ||||| || Sbjct 148546 AAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAGGAGGCG 148604 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||||||||||| |||| | ||||||||| |||| || || Sbjct 148605 GTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCA 148664 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| |||||| | || || || | |||| | | Sbjct 148665 GGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCTC 148724 Query 129967 AATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 |||| || | || || | | || | || | ||||| || |||||| || Sbjct 148725 AATGACCTGCTTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAGTC 148781 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| ||||||||||||||||||||||| || || |||||| |||||| |||||||| Sbjct 148782 GGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAG 148841 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | ||| || || | ||| | || ||||||||| ||||| || Sbjct 148842 ACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAAC 148901 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 | || || |||| ||||||| || |||||| Sbjct 148902 AGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 148935 >seq95 Length=35920 Score = 123 bits (136), Expect = 3e-23 Identities = 277/409 (68%), Gaps = 13/409 (3%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 || || ||||| || || | || || | ||||||||| || | ||| || | ||| Sbjct 25787 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 25728 Query 14126 ATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 14183 | |||||| | ||| | || | | | || || |||||||| ||||||| || || | Sbjct 25727 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 25670 Query 14184 TGGTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 14239 ||| |||||| || || || || ||| | |||| | ||| ||| | ||| Sbjct 25669 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 25611 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAG 14299 | |||||| || ||||||||||| | ||| || || | | | |||||| | |||| Sbjct 25610 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTTGCAAAC 25551 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 14357 | ||||||||||| | ||||||||| ||||||||||| ||||| | || | || | Sbjct 25550 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 25491 Query 14358 AACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417 | | || |||||| || ||| || || ||| |||| ||| || | ||||| | Sbjct 25490 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAATGTCTTAC 25433 Query 14418 CCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 | || ||||| || || |||| ||| ||||| |||||| | || || Sbjct 25432 CGGTTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCC 25384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428018421240