Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq572 183 4e-41
seq686 132 6e-26
seq95 123 3e-23
>seq572
Length=609512
Score = 183 bits (202), Expect = 4e-41
Identities = 925/1456 (64%), Gaps = 45/1456 (3%)
Strand=Plus/Plus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| |||| ||||||||||| |||||||| ||||| |||||||| || | ||||||
Sbjct 16812 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAG 16871
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301
|| || |||||||| || | ||| | ||||| || | ||| | ||| | || | |||
Sbjct 16872 GCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCC 16931
Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361
|| |||| |||||| || || | | || | | |||||| || ||||||||
Sbjct 16932 TTCAGAGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGG 16991
Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421
||||| ||||| || || ||||| | || || | |||||| ||| ||||
Sbjct 16992 ATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGC 17051
Query 118422 TCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479
| || | | | | || || ||||| || || || || || || || |
Sbjct 17052 T--GAACAGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGAT 17109
Query 118480 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 118539
| ||||||| || || || | | || | || |||| || ||||| |
Sbjct 17110 CACGGGCCTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCT 17169
Query 118540 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGG 118596
|||||||||| ||||| ||||| || | ||| || || ||||| ||| ||||
Sbjct 17170 GGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGG 17226
Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656
| || || ||| || | | | || | || || |||| |||| || |
Sbjct 17227 GGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGT 17286
Query 118657 GAAGCTTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712
||||||| | | | || | | | || | | ||| || | | || || ||
Sbjct 17287 GAAGCTTCTGGAAGTCGTAGACACCATCGT-TGTAGTCAACGA---AGGTGGGCAGAGCA 17342
Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772
| || |||| || || |||| | ||| || | |||||| || || || |||
Sbjct 17343 AGGGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTG 17402
Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832
|| | ||| || || || || || | |||||| || || ||| ||| |||
Sbjct 17403 CAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCA 17462
Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892
||||||||||||||| | || | || ||||| || || | || ||| || || | |||
Sbjct 17463 TCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAA 17522
Query 118893 A-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTA 118948
| | || | || | ||| ||| | | ||||| ||||||||| |||
Sbjct 17523 AGCTTCTGGGCCTTGA----TGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTA 17578
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
| ||| || ||||| || || | || | || || || || || ||||| |
Sbjct 17579 CAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACAT 17638
Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
||| | ||| | | || ||| || | ||||||||| || || ||||||||||| ||
Sbjct 17639 GAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGC 17698
Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128
||| || || || || | || || | || || || ||||| |||| ||
Sbjct 17699 GAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAA 17758
Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186
|| | || || |||||||| || || ||||| | |||| | || | ||||
Sbjct 17759 CTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCC---AGGACGCTT 17815
Query 119187 ----CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242
||| |||| | || || | |||||| |||||| ||||||||||| |||||||
Sbjct 17816 GTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGAC 17875
Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302
||| | || ||| || || || |||| || | |||| | || | |||
Sbjct 17876 ACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGC 17935
Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362
|| | |||||| || || ||| ||| ||||| ||||| | |||| || ||||
Sbjct 17936 GTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTA 17995
Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422
||| || || || ||||| |||| | ||| ||||||||| |||| || | ||
Sbjct 17996 GATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACT 18054
Query 119423 G-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACAT 119479
| || ||||||||||||||||| || || | |||||| ||| | | |||| ||||||
Sbjct 18055 GAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACAT 18112
Query 119480 CTTGTCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 119538
|| ||||||||| | |||| || | | || || || || |||| | || |
Sbjct 18113 GAGGTTGTAGGTCTCGATGACGCGCTCG-ACGTTATCACCCCAGATGCCGACTGCAACAC 18171
Query 119539 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA-ACTC 119597
|||| | ||||| |||||| | || | | ||||| ||| | | ||||| ||
Sbjct 18172 GCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATC 18231
Query 119598 TTCTCCAAGGTCTTGA 119613
|| |||| ||||||||
Sbjct 18232 TT-TCCAGGGTCTTGA 18246
>seq686
Length=266282
Score = 132 bits (146), Expect = 6e-26
Identities = 305/454 (67%), Gaps = 8/454 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| | || |||||||| |||||||| ||||| ||| | | | ||| ||||||||
Sbjct 148486 TAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 148545
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| || || ||||| || || | | || | | |||| ||||| ||
Sbjct 148546 AAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAGGAGGCG 148604
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | ||| |||||||||||| |||| | ||||||||| |||| || ||
Sbjct 148605 GTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCA 148664
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || || |||| ||| |||||| | || || || | |||| | |
Sbjct 148665 GGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCTC 148724
Query 129967 AATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|||| || | || || | | || | || | ||||| || |||||| ||
Sbjct 148725 AATGACCTGCTTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAGTC 148781
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| ||||||||||||||||||||||| || || |||||| |||||| ||||||||
Sbjct 148782 GGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAG 148841
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | ||| || || | ||| | || ||||||||| ||||| ||
Sbjct 148842 ACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAAC 148901
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177
| || || |||| ||||||| || ||||||
Sbjct 148902 AGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 148935
>seq95
Length=35920
Score = 123 bits (136), Expect = 3e-23
Identities = 277/409 (68%), Gaps = 13/409 (3%)
Strand=Plus/Minus
Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125
|| || ||||| || || | || || | ||||||||| || | ||| || | |||
Sbjct 25787 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 25728
Query 14126 ATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 14183
| |||||| | ||| | || | | | || || |||||||| ||||||| || || |
Sbjct 25727 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 25670
Query 14184 TGGTTTGTTCGCGTTCATCATTCGCAGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 14239
||| |||||| || || || || ||| | |||| | ||| ||| | |||
Sbjct 25669 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 25611
Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAG 14299
| |||||| || ||||||||||| | ||| || || | | | |||||| | ||||
Sbjct 25610 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTTGCAAAC 25551
Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 14357
| ||||||||||| | ||||||||| ||||||||||| ||||| | || | || |
Sbjct 25550 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 25491
Query 14358 AACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417
| | || |||||| || ||| || || ||| |||| ||| || | ||||| |
Sbjct 25490 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAATGTCTTAC 25433
Query 14418 CCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466
| || ||||| || || |||| ||| ||||| |||||| | || ||
Sbjct 25432 CGGTTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCC 25384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618428018421240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |