Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq572 223 4e-53 seq686 132 6e-26 >seq572 Length=609512 Score = 223 bits (246), Expect = 4e-53 Identities = 898/1398 (64%), Gaps = 41/1398 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || || | || ||| Sbjct 18190 CCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTC 18131 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| ||||| | || || |||| Sbjct 18130 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCCACACTCT 18073 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || ||| |||| |||||||| ||| || ||||| | Sbjct 18072 TCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 18013 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | |||||||| | || || | | || || ||||| ||| ||||| Sbjct 18012 ACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 17953 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | || || | | | |||| | || |||| || || | Sbjct 17952 GTGGCATTGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCCTATATTGCAGGCACCA 17893 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | ||| | ||||| |||||||| || |||||| ||| || ||||| | Sbjct 17892 ACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACG 17833 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | |||| | ||| ||||| || || |||| |||| |||||||| |||| Sbjct 17832 TCGATCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATCTACCTTGAGCCCTGGC 17776 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| || || | |||||| | || ||||| ||||| || | ||||||| || Sbjct 17775 ACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTG 17716 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||| || || ||| |||||||||||| || ||||| |||||||||||||| ||| ||| Sbjct 17715 CCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA 17656 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 | | | ||| | ||| | || || | || ||||| || | || | || | Sbjct 17655 ACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTACGGCG 17596 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCGA 104867 ||||||| || ||| | ||| ||||||||| || | | ||||| ||| | Sbjct 17595 AGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATCA 17536 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || |||| || | ||| | || || ||| || |||| ||||||||||| | | Sbjct 17535 AGG-CCCAGAAGC-----TTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACC 17482 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||||||||| || || |||| ||||| || || ||||| | || | Sbjct 17481 CCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACTA 17422 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCT 105046 || || ||||| ||||| || || ||| | || | | | || || ||| ||| Sbjct 17421 TCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCAC-CCGACGAGGTCGCT 17363 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATT 105105 || || ||| | || || | ||||| |||| | || || | || || | | | Sbjct 17362 GTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTGACTACAACGATGGTGTC-TA 17304 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || | | || || ||||| || || | || ||| | |||| | || Sbjct 17303 CGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGATCAT 17244 Query 105166 TGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||| || ||||||||| ||| ||||| || || ||| | ||||| || Sbjct 17243 TGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAACAGCAACATGCGTCACCGCCC 17187 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-G 105281 |||||||||||||| |||||||| || |||| ||| | ||| || || ||| | Sbjct 17186 CATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTTCG 17128 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || ||| || || |||| | || || |||||||| || ||||| |||| Sbjct 17127 AGTCTCCCGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCTC 17068 Query 105342 T--TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | | | |||| || |||| ||| || || | || || | ||||| || Sbjct 17067 TGACCATGTCTGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCTC 17010 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 105459 || || || || | || || | || |||||| | | || || | || Sbjct 17009 CCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTG 16950 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 || ||||| |||| ||||| | ||||||||| | ||| | || |||||| | ||| | Sbjct 16949 GGATTGGGACTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCGT 16890 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 ||||| ||||| || |||||||| | || |||||||| || || || ||||| || || Sbjct 16889 TGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGCC 16830 Query 105580 CTACACGACGAACATCTA 105597 ||||| | |||||||| Sbjct 16829 ATACACCTCCAACATCTA 16812 >seq686 Length=266282 Score = 132 bits (146), Expect = 6e-26 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTT 94800 |||| ||||| || || ||||| |||||||| | ||| || || ||||| Sbjct 148985 ATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCC---TCCTTC 148929 Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || |||| || | || ||||| ||||||||||||||||||| ||| | || | Sbjct 148928 GCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCC 148869 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 | || | ||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 148868 TCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTC 148809 Query 94921 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||||||||| || ||| || ||||| Sbjct 148808 ATCTCCCGTGACGAGGGTCTTCACACCGACTTTGC 148774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254026883960