Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq356 150 5e-31 seq69 127 6e-24 seq134 86.0 2e-11 >seq356 Length=254992 Score = 150 bits (166), Expect = 5e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||| ||||| || ||||| || ||||| Sbjct 83952 CATACCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATC 84011 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || ||||| || ||||| | || ||||| || || Sbjct 84012 CGACAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 84071 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||| || || || | || || || ||||| | || || | ||| Sbjct 84072 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTC 84131 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || |||| ||||| ||||| || || || || ||||||||||| Sbjct 84132 AACCTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 129 bits (142), Expect = 2e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| | || ||||| ||||| || ||||| || || || Sbjct 84180 CATACCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTC 84239 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| |||||||| || ||||||||||| | ||| ||||| ||||| Sbjct 84240 GGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 84299 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| || | || ||||| || || | |||||| | || Sbjct 84300 GGGGATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTC 84359 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 84360 GACCTCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398 Score = 104 bits (114), Expect = 7e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || |||||||| || ||||| || || || Sbjct 84466 CATACCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTC 84525 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||| || || ||||| |||||||| || Sbjct 84526 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGG 84585 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || ||||| || | ||| || | || Sbjct 84586 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTC 84645 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || | ||||| ||||| Sbjct 84646 GACCTCGAGAGTGATGGTCTTGCCGGT 84672 >seq69 Length=209040 Score = 127 bits (140), Expect = 6e-24 Identities = 221/320 (69%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 ||| | ||||| || ||||| || || || |||||||| || || || || || || Sbjct 14104 GTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGT 14045 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 |||||| || | || || || | || || || || || || ||||| || ||||| Sbjct 14044 CTCATTGCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCTGCCGCTATTGCC 13985 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | | || || || |||| || || ||| | |||||| Sbjct 13984 TACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGT 13925 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 |||||||| ||||| || || || || |||| ||||| ||||| || || || | || Sbjct 13924 GGTACTTTCGATGTGTCTCTCCTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCACC 13865 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 |||||||| || || | ||||| || || || || || |||||||| || || || Sbjct 13864 GCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTC 13805 Query 349913 AAAGAATTTAAGCGTCAAGC 349932 || || || ||||| ||||| Sbjct 13804 AACGAGTTCAAGCG-CAAGC 13786 >seq134 Length=182282 Score = 86.0 bits (94), Expect = 2e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 |||||||| || ||||| || || || || | ||||| | ||||||||||||||||| Sbjct 94977 ACACCAGCGAAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATTGACTGG 94918 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590 || || || || |||||||| || |||||| |||||| Sbjct 94917 GCCGCGATGACACCAACCATCTCACCAGGACTGACAA 94881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515236364210987