Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq356 150 5e-31
seq69 127 6e-24
seq134 86.0 2e-11
>seq356
Length=254992
Score = 150 bits (166), Expect = 5e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| ||||| ||||| || ||||| || |||||
Sbjct 83952 CATACCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATC 84011
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || ||||| || ||||| | || ||||| || ||
Sbjct 84012 CGACAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 84071
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || ||||| || || || | || || || ||||| | || || | |||
Sbjct 84072 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTC 84131
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || |||| ||||| ||||| || || || || |||||||||||
Sbjct 84132 AACCTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 129 bits (142), Expect = 2e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | ||||| | || ||||| ||||| || ||||| || || ||
Sbjct 84180 CATACCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTC 84239
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| |||||||| || ||||||||||| | ||| ||||| |||||
Sbjct 84240 GGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 84299
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||||||||| || | || ||||| || || | |||||| | ||
Sbjct 84300 GGGGATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTC 84359
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || || | ||||| || || || || || ||
Sbjct 84360 GACCTCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398
Score = 104 bits (114), Expect = 7e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || || |||||||| || ||||| || || ||
Sbjct 84466 CATACCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTC 84525
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || || ||||| || || ||||| |||||||| ||
Sbjct 84526 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGG 84585
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || ||||| || | ||| || | ||
Sbjct 84586 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTC 84645
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || | ||||| |||||
Sbjct 84646 GACCTCGAGAGTGATGGTCTTGCCGGT 84672
>seq69
Length=209040
Score = 127 bits (140), Expect = 6e-24
Identities = 221/320 (69%), Gaps = 1/320 (0%)
Strand=Plus/Minus
Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672
||| | ||||| || ||||| || || || |||||||| || || || || || ||
Sbjct 14104 GTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGT 14045
Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732
|||||| || | || || || | || || || || || || ||||| || |||||
Sbjct 14044 CTCATTGCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCTGCCGCTATTGCC 13985
Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792
|| || ||||| || | | || || || |||| || || ||| | ||||||
Sbjct 13984 TACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGT 13925
Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852
|||||||| ||||| || || || || |||| ||||| ||||| || || || | ||
Sbjct 13924 GGTACTTTCGATGTGTCTCTCCTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCACC 13865
Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912
|||||||| || || | ||||| || || || || || |||||||| || || ||
Sbjct 13864 GCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTC 13805
Query 349913 AAAGAATTTAAGCGTCAAGC 349932
|| || || ||||| |||||
Sbjct 13804 AACGAGTTCAAGCG-CAAGC 13786
>seq134
Length=182282
Score = 86.0 bits (94), Expect = 2e-11
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553
|||||||| || ||||| || || || || | ||||| | |||||||||||||||||
Sbjct 94977 ACACCAGCGAAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATTGACTGG 94918
Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAA 377590
|| || || || |||||||| || |||||| ||||||
Sbjct 94917 GCCGCGATGACACCAACCATCTCACCAGGACTGACAA 94881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515236364210987
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |