Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq572 266 4e-66
seq170 113 5e-20
seq686 104 3e-17
>seq572
Length=609512
Score = 266 bits (294), Expect = 4e-66
Identities = 520/758 (69%), Gaps = 14/758 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || || | || ||| ||||| || | ||| ||| ||||| |||
Sbjct 18177 TCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTCATCGAGACCTACA 18118
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | |||| ||| || |||||| | || || || ||||||||||||||
Sbjct 18117 ACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACCC 18058
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
||| ||| |||| |||||||| || | |||||||| ||||| || || || |
Sbjct 18057 CTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTA 17998
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || |||||| || ||| ||||||||| | | ||||| || ||| ||
Sbjct 17997 TCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCA 17938
Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| |||| | ||| |||||| | ||| | || || || |||||| | | |
Sbjct 17937 AC-GCTC-ACCGTATCCGTGCCACTGGCTCCTATATTGCAGGCACCAACGGCACCTCGAA 17880
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| || | || ||||| || ||||| |||||||| || || |||||| | ||||||||
Sbjct 17879 CGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGATCAGGGTGG 17820
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | ||||| |||||||| ||||| |||||||||||| | | ||
Sbjct 17819 CAACAAGCGTCCTGGCGCTTTCGCTATCTACCTTGAGCCCTGGCACGCCGACGTCTTCGA 17760
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| | || |||| ||| || || | || ||| | || ||||||||| ||
Sbjct 17759 GTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCT 17700
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
||||| ||||| || || || |||||| | | || |||||| ||| || ||| |||
Sbjct 17699 CGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGACTGGACCCT 17640
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789
|||||||| || |||||||| ||||| | | || |||||| |||||||| | |
Sbjct 17639 CATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTG-CTACGGCGAGGAGTTCGAGGCCT 17581
Query 53790 TGTATCGGACGTACGCAGTTC-AGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845
|||| || ||||| || | ||||| | ||||| | ||||||| | ||
Sbjct 17580 TGTACGAGAAGTACG-AGCGCGAGGGCAAGGGTCGCAAGACCA---TCAAGGCCCAGAAG 17525
Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905
| ||| |||| |||||| || ||| ||||| || | || | |||| ||||||
Sbjct 17524 CTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAG 17465
Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
||| | | |||| |||||||||||||||||| ||||
Sbjct 17464 GATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 17427
Score = 105 bits (116), Expect = 7e-18
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| | ||| ||| || |||||||| | ||| | | || | ||| ||
Sbjct 16659 TCAAGGCTCTGTACAAGACCGTCTGGGAGATATCCCAGCGCACCGTTGTTCAGATGGCTG 16600
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
| || |||||||| | |||||||||||||||||| || |||||| |||| || | ||
Sbjct 16599 CCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACATGAAGGACCCGA 16540
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
|| ||| |||| | | | |||||||| ||| |||||| || ||||||||||| |
Sbjct 16539 CAATGGGCAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACGGGCA 16480
Query 55908 TGTACTATCTGCGGAC 55923
||||||| ||||| ||
Sbjct 16479 TGTACTACCTGCGTAC 16464
>seq170
Length=324604
Score = 113 bits (124), Expect = 5e-20
Identities = 196/285 (69%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
||||| || | |||||| ||||| ||||| || || || | || || | ||| |||
Sbjct 64243 ATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGGGAACCGAAGTTTCCGGAG 64302
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| | | ||||| |||||| | ||||| || |||| || | | || ||
Sbjct 64303 GGCTCTAAGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGGGCGAGTCCGATGATGGTC 64362
Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214
||||||| | ||||||||||||| || | |||||||| | ||||| || |||||
Sbjct 64363 TGCTGCAGAGACACTTCACCGTGGTGGTAGGAAGTCTGCTCAGAAATGTAACCGGCCAAT 64422
Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274
| | |||||| || | || |||| |||||| ||||||||| || || || ||
Sbjct 64423 TCAACGACCTTCTGATCTTTGACCAAGTTCCTCTTGAAACAGGCGTACATGACTTTACGT 64482
Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319
|| || ||||| ||||||| || ||||| |||||| ||
Sbjct 64483 TGACCGGGCTTCAATCCGTCCAGAACAGAGGGAATGGAACGCATG 64527
Score = 107 bits (118), Expect = 2e-18
Identities = 210/306 (69%), Gaps = 6/306 (2%)
Strand=Plus/Plus
Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352
|||| ||| | ||| ||||||||||| ||| |||||||| ||||| ||||| ||
Sbjct 64225 GGTGATAGTCTTGTGTGAATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGG 64284
Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412
| |||||| | ||| ||||| ||| ||| | |||||| | ||||||||| | ||
Sbjct 64285 GAACCGAAGTTTCCGGAGGGCTCTAAGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGG 64344
Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472
|| | || || || || || | | ||||| ||||| || | ||||||||
Sbjct 64345 GCGAGTCCGATGATGGTCTGCTGCAGAGACACTTCACCGTGGTGGTAGGAAGTCTGCTCA 64404
Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGC 117530
| | ||| || |||| | | | |||||| || | |||| || |||| |||||| |
Sbjct 64405 GAAATGTAACCGGCCAATTCAACGACCTTCTGATCTTTGAC--CAAGTTCCTCTTGAAAC 64462
Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAA 117589
|||| || || || || || |||| ||||||| || ||| || ||||| || |||
Sbjct 64463 AGGCGTACATGACTTTACGTTGACCGGGCTTCAATCCGTCCAGAAC-AGAGGGAATGGAA 64521
Query 117590 CGCTTG 117595
||| ||
Sbjct 64522 CGCATG 64527
>seq686
Length=266282
Score = 104 bits (114), Expect = 3e-17
Identities = 301/454 (66%), Gaps = 16/454 (4%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| ||| |||| ||||| ||||| ||||||||||| || | | ||||||||||||||
Sbjct 148486 TAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 148545
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580
||||||| ||||| | ||| | | | | | | || | | | ||| |||||
Sbjct 148546 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGT-TGCCAAGAGCGA-CCAGGAGGC 148603
Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640
| || || || || | |||||||||| |||| | | |||||||| || ||
Sbjct 148604 GGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGC 148663
Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGT 74700
| ||||| ||||| |||| ||||| ||| | || | || || || | |
Sbjct 148664 AGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCT 148723
Query 74701 GAATGTCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACGGCAAAC 74756
|||| | | || |||| | | | ||||||||||| ||| | || ||||||
Sbjct 148724 CAATGACCTGCTTGTTGGGGCGGTGCT---TGAGGTGAGAGTACAAGAGGCA-GGCAAAG 148779
Query 74757 TCCTGATGCGAG--CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814
|| | || || || || || | | || | || || || || | || |||||||
Sbjct 148780 TC--GGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCA 148837
Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874
| || ||||||||||| | ||||||||||| || | ||| ||||||||||| || |
Sbjct 148838 TGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCT 148897
Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
| ||| |||||||| || || || || |||||
Sbjct 148898 CAACAGCGGCAAAGGCAACCAGACGCTGGGCGAA 148931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547209645454200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |