Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq572 266 4e-66 seq170 113 5e-20 seq686 104 3e-17 >seq572 Length=609512 Score = 266 bits (294), Expect = 4e-66 Identities = 520/758 (69%), Gaps = 14/758 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || ||| ||||| || | ||| ||| ||||| ||| Sbjct 18177 TCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTCATCGAGACCTACA 18118 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||| || |||||| | || || || |||||||||||||| Sbjct 18117 ACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACCC 18058 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| ||| |||| |||||||| || | |||||||| ||||| || || || | Sbjct 18057 CTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTA 17998 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| || ||| ||||||||| | | ||||| || ||| || Sbjct 17997 TCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCA 17938 Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || |||| | ||| |||||| | ||| | || || || |||||| | | | Sbjct 17937 AC-GCTC-ACCGTATCCGTGCCACTGGCTCCTATATTGCAGGCACCAACGGCACCTCGAA 17880 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || | || ||||| || ||||| |||||||| || || |||||| | |||||||| Sbjct 17879 CGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGATCAGGGTGG 17820 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | ||||| |||||||| ||||| |||||||||||| | | || Sbjct 17819 CAACAAGCGTCCTGGCGCTTTCGCTATCTACCTTGAGCCCTGGCACGCCGACGTCTTCGA 17760 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| | || |||| ||| || || | || ||| | || ||||||||| || Sbjct 17759 GTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCT 17700 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||| ||||| || || || |||||| | | || |||||| ||| || ||| ||| Sbjct 17699 CGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGACTGGACCCT 17640 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||| || |||||||| ||||| | | || |||||| |||||||| | | Sbjct 17639 CATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTG-CTACGGCGAGGAGTTCGAGGCCT 17581 Query 53790 TGTATCGGACGTACGCAGTTC-AGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 |||| || ||||| || | ||||| | ||||| | ||||||| | || Sbjct 17580 TGTACGAGAAGTACG-AGCGCGAGGGCAAGGGTCGCAAGACCA---TCAAGGCCCAGAAG 17525 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| |||| |||||| || ||| ||||| || | || | |||| |||||| Sbjct 17524 CTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAG 17465 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||| | | |||| |||||||||||||||||| |||| Sbjct 17464 GATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 17427 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| ||| || |||||||| | ||| | | || | ||| || Sbjct 16659 TCAAGGCTCTGTACAAGACCGTCTGGGAGATATCCCAGCGCACCGTTGTTCAGATGGCTG 16600 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || |||||||| | |||||||||||||||||| || |||||| |||| || | || Sbjct 16599 CCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACATGAAGGACCCGA 16540 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 || ||| |||| | | | |||||||| ||| |||||| || ||||||||||| | Sbjct 16539 CAATGGGCAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACGGGCA 16480 Query 55908 TGTACTATCTGCGGAC 55923 ||||||| ||||| || Sbjct 16479 TGTACTACCTGCGTAC 16464 >seq170 Length=324604 Score = 113 bits (124), Expect = 5e-20 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | |||||| ||||| ||||| || || || | || || | ||| ||| Sbjct 64243 ATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGGGAACCGAAGTTTCCGGAG 64302 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| | | ||||| |||||| | ||||| || |||| || | | || || Sbjct 64303 GGCTCTAAGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGGGCGAGTCCGATGATGGTC 64362 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||||||| | ||||||||||||| || | |||||||| | ||||| || ||||| Sbjct 64363 TGCTGCAGAGACACTTCACCGTGGTGGTAGGAAGTCTGCTCAGAAATGTAACCGGCCAAT 64422 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | | |||||| || | || |||| |||||| ||||||||| || || || || Sbjct 64423 TCAACGACCTTCTGATCTTTGACCAAGTTCCTCTTGAAACAGGCGTACATGACTTTACGT 64482 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 || || ||||| ||||||| || ||||| |||||| || Sbjct 64483 TGACCGGGCTTCAATCCGTCCAGAACAGAGGGAATGGAACGCATG 64527 Score = 107 bits (118), Expect = 2e-18 Identities = 210/306 (69%), Gaps = 6/306 (2%) Strand=Plus/Plus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| ||| | ||| ||||||||||| ||| |||||||| ||||| ||||| || Sbjct 64225 GGTGATAGTCTTGTGTGAATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGG 64284 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | ||| ||||| ||| ||| | |||||| | ||||||||| | || Sbjct 64285 GAACCGAAGTTTCCGGAGGGCTCTAAGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGG 64344 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 || | || || || || || | | ||||| ||||| || | |||||||| Sbjct 64345 GCGAGTCCGATGATGGTCTGCTGCAGAGACACTTCACCGTGGTGGTAGGAAGTCTGCTCA 64404 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTC--ATGTCTGACGTCAGGTTCTTCTTGAGGC 117530 | | ||| || |||| | | | |||||| || | |||| || |||| |||||| | Sbjct 64405 GAAATGTAACCGGCCAATTCAACGACCTTCTGATCTTTGAC--CAAGTTCCTCTTGAAAC 64462 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAA 117589 |||| || || || || || |||| ||||||| || ||| || ||||| || ||| Sbjct 64463 AGGCGTACATGACTTTACGTTGACCGGGCTTCAATCCGTCCAGAAC-AGAGGGAATGGAA 64521 Query 117590 CGCTTG 117595 ||| || Sbjct 64522 CGCATG 64527 >seq686 Length=266282 Score = 104 bits (114), Expect = 3e-17 Identities = 301/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||| |||| ||||| ||||| ||||||||||| || | | |||||||||||||| Sbjct 148486 TAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 148545 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||||||| ||||| | ||| | | | | | | || | | | ||| ||||| Sbjct 148546 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGT-TGCCAAGAGCGA-CCAGGAGGC 148603 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 | || || || || | |||||||||| |||| | | |||||||| || || Sbjct 148604 GGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGC 148663 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGT 74700 | ||||| ||||| |||| ||||| ||| | || | || || || | | Sbjct 148664 AGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCT 148723 Query 74701 GAATGTCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACGGCAAAC 74756 |||| | | || |||| | | | ||||||||||| ||| | || |||||| Sbjct 148724 CAATGACCTGCTTGTTGGGGCGGTGCT---TGAGGTGAGAGTACAAGAGGCA-GGCAAAG 148779 Query 74757 TCCTGATGCGAG--CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 || | || || || || || | | || | || || || || | || ||||||| Sbjct 148780 TC--GGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCA 148837 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || ||||||||||| | ||||||||||| || | ||| ||||||||||| || | Sbjct 148838 TGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCT 148897 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 | ||| |||||||| || || || || ||||| Sbjct 148898 CAACAGCGGCAAAGGCAACCAGACGCTGGGCGAA 148931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209645454200