Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq572 311 1e-79
seq356 170 2e-37
seq863 136 5e-27
seq477 120 3e-22
>seq572
Length=609512
Score = 311 bits (344), Expect = 1e-79
Identities = 1145/1768 (65%), Gaps = 69/1768 (4%)
Strand=Plus/Plus
Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090
|||| |||| ||||| |||||||||||||||||||| || |||||||||| | |||
Sbjct 16457 TGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTG 16516
Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150
|||| ||| ||| | | ||| |||| || |||| |||||| || ||||| |||||
Sbjct 16517 CATACTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTG 16576
Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210
|||||| || ||||| || || ||||| | || || | || | || |||||
Sbjct 16577 GTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGATATCTCCCA 16636
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| | ||| | ||||||| | | | | |
Sbjct 16637 GACGGTCTTGTACAGAGCCTTG---ACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA 16693
Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||||| || | || | || |||| || | ||| | || | | | ||
Sbjct 16694 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAG 16753
Query 80325 ATCTTTCA-CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGAT 80383
||| |||| ||| | ||||| | ||||| || || || ||||| | |
Sbjct 16754 ATCCTTCAACAACCAGGG-GTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGT 16812
Query 80384 ACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCG 80443
| | ||| | ||||| ||||| || ||||||||| || | |||||| | ||| |
Sbjct 16813 AGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGG 16872
Query 80444 CCGTCGGCATCGG-GC--CGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCT 80500
| || ||||| || || ||| ||| | || || |||| ||||||| |||||| | ||
Sbjct 16873 CAGTAGGCATGGGAGCAACGAGCAA-ACTG--TTGCGCACACCGTGCTCCTTGATCTGCT 16929
Query 80501 CGCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTG 80552
| || | || | ||| | ||| | ||| |||| |||||||||||
Sbjct 16930 CCTTCAGAGAGTCCCAATCCCAGAGGTCAG----AGGGCT-TGACATTCCACATGTCGTA 16984
Query 80553 CTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT 80612
||| | ||| |||| || || || ||| || |||| ||| | ||||||| |||
Sbjct 16985 CTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTT 17044
Query 80613 GGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672
|||||||| | ||| | || || ||||| || ||| ||| |||| ||||||
Sbjct 17045 GGCCAGCTGAACAGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTT 17104
Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732
| | | || |||| || ||||| | || || | | ||| | ||||| ||
Sbjct 17105 GAGATCACGGGCCTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAG 17164
Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAA 80791
||||| || |||| | || |||||||| ||| |||| | | || ||||| ||||
Sbjct 17165 ACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTT-GCTGTTGCGAGCCTCGGGAA 17223
Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851
||||| ||| ||| |||| ||||| |||||| ||| ||| | || || |
Sbjct 17224 CGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCT 17283
Query 80852 CATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCA 80905
| ||||| ||||| |||||| | | ||| | || || | || || |
Sbjct 17284 CGTGAAGCTTCTGGAAGTCGTAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAA 17343
Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGC 80965
|||| |||| ||||| || || ||||| || | | |||| | ||| || ||||
Sbjct 17344 GGGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGC 17403
Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025
| | || || || || || ||||| |||||||| |||| |||| ||| |
Sbjct 17404 AGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCAT 17463
Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085
||||||| |||| | ||| | || |||||| ||| | || ||||||||| | |||||
Sbjct 17464 CCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAA 17523
Query 81086 TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTT 81145
|| | ||||||| |||||| ||||| ||| | | ||||| ||||
Sbjct 17524 GCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGG 17583
Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204
| ||||||| | |||| | ||| ||| ||| | |||||||| || |||||||| |||
Sbjct 17584 CCTCGAACTCCTCGCCGTAGCAGT-CAGCCAGGCCAGGGCACTCATTGGGGCACATGAGG 17642
Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264
|||||||| || ||||| || ||||||||| || ||||||||||| ||| |
Sbjct 17643 GTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGG 17702
Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324
|| ||||| ||| || ||||||| | || ||||| |||||| || | || ||
Sbjct 17703 AAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCG 17762
Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCG--ATCGAC----CCCTTGCGACGG 81378
| || ||| || ||||| ||||| || || | ||| | || | | |||| |
Sbjct 17763 AAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTG---TTG 17819
Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438
|||||||| | |||||| || ||||| |||||| ||||| | ||| || |||| |||
Sbjct 17820 CCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCG 17879
Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTG 81496
| || ||||| || || | ||| || || |||| || || || |||
Sbjct 17880 TTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTG 17939
Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556
||||| |||||||| | | ||| || ||| || || || | ||| || || |
Sbjct 17940 --AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGA 17997
Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTG 81608
| ||||| || |||| |||||||| ||||| ||| ||||| || || |||
Sbjct 17998 TACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-CTG 18055
Query 81609 AGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA 81668
|||| | || || ||||| ||||| |||| ||||| |||| | | | ||
Sbjct 18056 AGGG------GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 18109
Query 81669 CATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728
||| |||| ||||| || ||||||| | | ||||| || |||| || ||
Sbjct 18110 CATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAAC 18169
Query 81729 ACGCATAAACATGTACTGGGGCGTCTCG 81756
|||||| | ||||| |||||| |||||
Sbjct 18170 ACGCATGATCATGTGCTGGGGTCTCTCG 18197
>seq356
Length=254992
Score = 170 bits (188), Expect = 2e-37
Identities = 178/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| || || ||||| ||||| | || || |||||| |
Sbjct 83954 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACGTTGGAAGTCGAGTCATCT 83895
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || ||||| | || || |||||||||||||| || ||||| ||||||
Sbjct 83894 GACACGATTGATAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 83835
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||| ||||| | || |||| ||| || | ||| ||||| ||
Sbjct 83834 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACTTTGAGC-GACTACAA 83776
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| |||| |||||||| || || ||||| ||| | |||||||| || || ||
Sbjct 83775 TATCCAGAAGGAATCAACCCTCCATCTGGTCCTCCGTCTTCGTGGCGGCCA 83725
Score = 167 bits (184), Expect = 3e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
||||||||||| || |||||||| || || || ||||| ||||| ||||| || |
Sbjct 84398 GTCAAGACGCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGATACTATCGAC 84339
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || |||||||| |||||||| || || || |||||||||||| | ||
Sbjct 84338 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATC 84279
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| |||||||| ||||||| || ||||| | ||||| || | || |||||
Sbjct 84278 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAG 84219
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||| || | || | ||||||||||||||
Sbjct 84218 TCCACTCTCCACTTGGTTCTCCGTCTTCGCGGTGG 84184
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| |||||||||||||| ||||| || |||||||| ||
Sbjct 84182 ATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 84123
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||| | || || || || |||||||| |||||||| ||||||
Sbjct 84122 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCGACCAG 84063
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || ||||| || ||||||| ||| ||||| | || || ||
Sbjct 84062 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATTACAAC 84003
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || ||||| ||||| ||| |||| || || |||||
Sbjct 84002 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGCCTGCGTGGTGG 83956
Score = 136 bits (150), Expect = 5e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||| ||||| ||||| |||| ||| | || ||||| |
Sbjct 84672 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACGTGAAGTCC 84613
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || || || || ||||||||||| ||||| ||||| |||
Sbjct 84612 AAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 84553
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | || ||||| | ||||| || | || ||||| || || || ||
Sbjct 84552 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 84493
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | || ||||| |||||
Sbjct 84492 TTGGTTCTCCGCCTTCGTGGTGG 84470
>seq863
Length=517823
Score = 136 bits (150), Expect = 5e-27
Identities = 132/170 (78%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || || ||||||||||| || |||||||| |||||
Sbjct 7256 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 7315
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 7316 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 7375
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572
||||||||||| || || || || ||||| |||||||| | || |||||
Sbjct 7376 CAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCT 7425
>seq477
Length=261965
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 234391 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 234332
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || ||||||||||| ||
Sbjct 234331 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 234272
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||| ||||| || ||||||| || ||||| | ||||| || |||| |||
Sbjct 234271 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 234212
Query 27595 G 27595
|
Sbjct 234211 G 234211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570303777270480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |