Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq572 311 1e-79 seq356 170 2e-37 seq863 136 5e-27 seq477 120 3e-22 >seq572 Length=609512 Score = 311 bits (344), Expect = 1e-79 Identities = 1145/1768 (65%), Gaps = 69/1768 (4%) Strand=Plus/Plus Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090 |||| |||| ||||| |||||||||||||||||||| || |||||||||| | ||| Sbjct 16457 TGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTG 16516 Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150 |||| ||| ||| | | ||| |||| || |||| |||||| || ||||| ||||| Sbjct 16517 CATACTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTG 16576 Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210 |||||| || ||||| || || ||||| | || || | || | || ||||| Sbjct 16577 GTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGATATCTCCCA 16636 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| | ||| | ||||||| | | | | | Sbjct 16637 GACGGTCTTGTACAGAGCCTTG---ACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA 16693 Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| || | || | || |||| || | ||| | || | | | || Sbjct 16694 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAG 16753 Query 80325 ATCTTTCA-CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGAT 80383 ||| |||| ||| | ||||| | ||||| || || || ||||| | | Sbjct 16754 ATCCTTCAACAACCAGGG-GTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGT 16812 Query 80384 ACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCG 80443 | | ||| | ||||| ||||| || ||||||||| || | |||||| | ||| | Sbjct 16813 AGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGG 16872 Query 80444 CCGTCGGCATCGG-GC--CGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCT 80500 | || ||||| || || ||| ||| | || || |||| ||||||| |||||| | || Sbjct 16873 CAGTAGGCATGGGAGCAACGAGCAA-ACTG--TTGCGCACACCGTGCTCCTTGATCTGCT 16929 Query 80501 CGCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTG 80552 | || | || | ||| | ||| | ||| |||| ||||||||||| Sbjct 16930 CCTTCAGAGAGTCCCAATCCCAGAGGTCAG----AGGGCT-TGACATTCCACATGTCGTA 16984 Query 80553 CTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT 80612 ||| | ||| |||| || || || ||| || |||| ||| | ||||||| ||| Sbjct 16985 CTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTT 17044 Query 80613 GGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 |||||||| | ||| | || || ||||| || ||| ||| |||| |||||| Sbjct 17045 GGCCAGCTGAACAGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTT 17104 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | | | || |||| || ||||| | || || | | ||| | ||||| || Sbjct 17105 GAGATCACGGGCCTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAG 17164 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAA 80791 ||||| || |||| | || |||||||| ||| |||| | | || ||||| |||| Sbjct 17165 ACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTT-GCTGTTGCGAGCCTCGGGAA 17223 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| ||| |||| ||||| |||||| ||| ||| | || || | Sbjct 17224 CGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCT 17283 Query 80852 CATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCA 80905 | ||||| ||||| |||||| | | ||| | || || | || || | Sbjct 17284 CGTGAAGCTTCTGGAAGTCGTAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAA 17343 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGC 80965 |||| |||| ||||| || || ||||| || | | |||| | ||| || |||| Sbjct 17344 GGGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGC 17403 Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025 | | || || || || || ||||| |||||||| |||| |||| ||| | Sbjct 17404 AGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCAT 17463 Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 ||||||| |||| | ||| | || |||||| ||| | || ||||||||| | ||||| Sbjct 17464 CCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAA 17523 Query 81086 TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTT 81145 || | ||||||| |||||| ||||| ||| | | ||||| |||| Sbjct 17524 GCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGG 17583 Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | ||||||| | |||| | ||| ||| ||| | |||||||| || |||||||| ||| Sbjct 17584 CCTCGAACTCCTCGCCGTAGCAGT-CAGCCAGGCCAGGGCACTCATTGGGGCACATGAGG 17642 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 |||||||| || ||||| || ||||||||| || ||||||||||| ||| | Sbjct 17643 GTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGG 17702 Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 || ||||| ||| || ||||||| | || ||||| |||||| || | || || Sbjct 17703 AAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCG 17762 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCG--ATCGAC----CCCTTGCGACGG 81378 | || ||| || ||||| ||||| || || | ||| | || | | |||| | Sbjct 17763 AAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTG---TTG 17819 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 |||||||| | |||||| || ||||| |||||| ||||| | ||| || |||| ||| Sbjct 17820 CCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCG 17879 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTG 81496 | || ||||| || || | ||| || || |||| || || || ||| Sbjct 17880 TTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTG 17939 Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 ||||| |||||||| | | ||| || ||| || || || | ||| || || | Sbjct 17940 --AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGA 17997 Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTG 81608 | ||||| || |||| |||||||| ||||| ||| ||||| || || ||| Sbjct 17998 TACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-CTG 18055 Query 81609 AGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA 81668 |||| | || || ||||| ||||| |||| ||||| |||| | | | || Sbjct 18056 AGGG------GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 18109 Query 81669 CATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728 ||| |||| ||||| || ||||||| | | ||||| || |||| || || Sbjct 18110 CATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAAC 18169 Query 81729 ACGCATAAACATGTACTGGGGCGTCTCG 81756 |||||| | ||||| |||||| ||||| Sbjct 18170 ACGCATGATCATGTGCTGGGGTCTCTCG 18197 >seq356 Length=254992 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || || ||||| ||||| | || || |||||| | Sbjct 83954 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACGTTGGAAGTCGAGTCATCT 83895 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| | || || |||||||||||||| || ||||| |||||| Sbjct 83894 GACACGATTGATAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 83835 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| | || |||| ||| || | ||| ||||| || Sbjct 83834 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACTTTGAGC-GACTACAA 83776 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||| |||||||| || || ||||| ||| | |||||||| || || || Sbjct 83775 TATCCAGAAGGAATCAACCCTCCATCTGGTCCTCCGTCTTCGTGGCGGCCA 83725 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||||||||| || |||||||| || || || ||||| ||||| ||||| || | Sbjct 84398 GTCAAGACGCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGATACTATCGAC 84339 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || |||||||| |||||||| || || || |||||||||||| | || Sbjct 84338 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATC 84279 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| ||||||| || ||||| | ||||| || | || ||||| Sbjct 84278 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAG 84219 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || | || | |||||||||||||| Sbjct 84218 TCCACTCTCCACTTGGTTCTCCGTCTTCGCGGTGG 84184 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| |||||||||||||| ||||| || |||||||| || Sbjct 84182 ATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 84123 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || || || |||||||| |||||||| |||||| Sbjct 84122 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCGACCAG 84063 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| || ||||||| ||| ||||| | || || || Sbjct 84062 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATTACAAC 84003 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| ||||| ||| |||| || || ||||| Sbjct 84002 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGCCTGCGTGGTGG 83956 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||| ||||| ||||| |||| ||| | || ||||| | Sbjct 84672 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACGTGAAGTCC 84613 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || || ||||||||||| ||||| ||||| ||| Sbjct 84612 AAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 84553 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || | || ||||| || || || || Sbjct 84552 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 84493 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || ||||| ||||| Sbjct 84492 TTGGTTCTCCGCCTTCGTGGTGG 84470 >seq863 Length=517823 Score = 136 bits (150), Expect = 5e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || |||||||| ||||| Sbjct 7256 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 7315 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 7316 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 7375 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 ||||||||||| || || || || ||||| |||||||| | || ||||| Sbjct 7376 CAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCT 7425 >seq477 Length=261965 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 234391 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 234332 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| || Sbjct 234331 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 234272 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||||| || ||||| | ||||| || |||| ||| Sbjct 234271 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 234212 Query 27595 G 27595 | Sbjct 234211 G 234211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303777270480