Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq230 114 1e-20 >seq230 Length=716270 Score = 114 bits (126), Expect = 1e-20 Identities = 444/694 (64%), Gaps = 63/694 (9%) Strand=Plus/Minus Query 29817 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 29876 |||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| | Sbjct 622120 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 622061 Query 29877 GCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCC 29935 ||| ||||||| ||| ||||||||| ||||| |||| | ||| | | || |||| Sbjct 622060 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 622002 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 ||| | || || | | || ||||||| ||| ||||| | ||||||||| ||||| Sbjct 622001 GGTACCAGGTCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGTAGCTGGCAATGTTG 621942 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 30050 ||||| || ||||| |||||||| | |||| |||||| | ||| || ||| | Sbjct 621941 AAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAACTGGCAATGGAGGTGGCCC 621882 Query 30051 -----------CTC--------------CGTCGC----TC-----------ACGTAAAAC 30070 ||| || ||| || ||||||||| Sbjct 621881 TTTGGCTTCTCCTCGTTTGCGGGCGTTGCGCCGCGGGCTCGCGGGTACGAGACGTAAAAC 621822 Query 30071 TG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127 || | ||||| |||||||| || || ||||| || ||| ||||||||| Sbjct 621821 TGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGGTTCCAG 621765 Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30187 |||| | || |||||| | ||| | ||||| || ||| || | | | | | Sbjct 621764 GCGCTAAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCC 621705 Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 || || || || ||| |||| ||| || | | | ||| |||||| || || || Sbjct 621704 AGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAG 621645 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || | ||| ||||| |||||||| || || ||||| || |||| | ||| ||| || Sbjct 621644 TGGCGCCATTGGAAGCCGTACACGGGACCGAGGTCACCGACTTCGCGGTG-GGAAAGACC 621586 Query 30308 CTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTT--CT 30362 | |||| | || || | || || ||| ||||||||||||| || || ||| || Sbjct 621585 GACGCTGTCGAGGAACTCGCGCGATCCATTGCCGTCCCAGATCTTGACACCGGCTTCGCT 621526 Query 30363 CAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30422 ||| | | | || || | || ||||| |||||||||||| || || | | ||| | Sbjct 621525 CAGGGCGAGCGATGATGTGT-TG--CCCTC-GACGAACCACAGGAGTTCGGCAATGACTG 621470 Query 30423 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | ||||| | ||| || ||||||||||| Sbjct 621469 CGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGG 621436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305799677468