Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq230 114 1e-20
>seq230
Length=716270
Score = 114 bits (126), Expect = 1e-20
Identities = 444/694 (64%), Gaps = 63/694 (9%)
Strand=Plus/Minus
Query 29817 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 29876
|||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| |
Sbjct 622120 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 622061
Query 29877 GCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCC 29935
||| ||||||| ||| ||||||||| ||||| |||| | ||| | | || ||||
Sbjct 622060 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 622002
Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995
||| | || || | | || ||||||| ||| ||||| | ||||||||| |||||
Sbjct 622001 GGTACCAGGTCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGTAGCTGGCAATGTTG 621942
Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 30050
||||| || ||||| |||||||| | |||| |||||| | ||| || ||| |
Sbjct 621941 AAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAACTGGCAATGGAGGTGGCCC 621882
Query 30051 -----------CTC--------------CGTCGC----TC-----------ACGTAAAAC 30070
||| || ||| || |||||||||
Sbjct 621881 TTTGGCTTCTCCTCGTTTGCGGGCGTTGCGCCGCGGGCTCGCGGGTACGAGACGTAAAAC 621822
Query 30071 TG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30127
|| | ||||| |||||||| || || ||||| || ||| |||||||||
Sbjct 621821 TGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGGTTCCAG 621765
Query 30128 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30187
|||| | || |||||| | ||| | ||||| || ||| || | | | | |
Sbjct 621764 GCGCTAAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCC 621705
Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247
|| || || || ||| |||| ||| || | | | ||| |||||| || || ||
Sbjct 621704 AGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAG 621645
Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307
|| | ||| ||||| |||||||| || || ||||| || |||| | ||| ||| ||
Sbjct 621644 TGGCGCCATTGGAAGCCGTACACGGGACCGAGGTCACCGACTTCGCGGTG-GGAAAGACC 621586
Query 30308 CTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTT--CT 30362
| |||| | || || | || || ||| ||||||||||||| || || ||| ||
Sbjct 621585 GACGCTGTCGAGGAACTCGCGCGATCCATTGCCGTCCCAGATCTTGACACCGGCTTCGCT 621526
Query 30363 CAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30422
||| | | | || || | || ||||| |||||||||||| || || | | ||| |
Sbjct 621525 CAGGGCGAGCGATGATGTGT-TG--CCCTC-GACGAACCACAGGAGTTCGGCAATGACTG 621470
Query 30423 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456
| ||||| | ||| || |||||||||||
Sbjct 621469 CGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGG 621436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406305799677468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |