Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq356 95.1 8e-15 >seq356 Length=254992 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| || | ||| ||||| |||||| |||||||| ||||| || || || || Sbjct 83965 AGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGA 84024 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 84025 CCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCC 84084 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||||| | || ||| | ||| |||||| || || || | || Sbjct 84085 TTATCTTGGATCTTC-GACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGT 84143 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| | || || || ||||||||||| Sbjct 84144 AATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536 |||||| | |||||| | |||| |||||| || ||||| || || || || || | Sbjct 83727 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCT 83786 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 |||||| || | ||||| | || || || || || || | |||||| ||||| || Sbjct 83787 CAAAGTG--CGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGA 83844 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655 || | ||||||||||| |||| || | || ||| || ||| ||||| ||| Sbjct 83845 GGGATACCCTCCTTGTCCTGGATC-TTGGACTTCACGTTATCAATCGTGTCAGATGACTC 83903 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || ||||| || || || | ||| || || || |||||||| Sbjct 83904 GACTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726036572457