Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq356 95.1 8e-15
>seq356
Length=254992
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| || | ||| ||||| |||||| |||||||| ||||| || || || ||
Sbjct 83965 AGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGA 84024
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || ||||| || || || ||||| ||||| || || | ||||||
Sbjct 84025 CCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCC 84084
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| |||||| | || ||| | ||| |||||| || || || | ||
Sbjct 84085 TTATCTTGGATCTTC-GACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGT 84143
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || ||||| | || || || |||||||||||
Sbjct 84144 AATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 84.2 bits (92), Expect = 1e-11
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--T 34536
|||||| | |||||| | |||| |||||| || ||||| || || || || || |
Sbjct 83727 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCT 83786
Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
|||||| || | ||||| | || || || || || || | |||||| ||||| ||
Sbjct 83787 CAAAGTG--CGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGA 83844
Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655
|| | ||||||||||| |||| || | || ||| || ||| ||||| |||
Sbjct 83845 GGGATACCCTCCTTGTCCTGGATC-TTGGACTTCACGTTATCAATCGTGTCAGATGACTC 83903
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||||| || ||||| || || || | ||| || || || ||||||||
Sbjct 83904 GACTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314726036572457
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |