Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq356 122 8e-23
>seq356
Length=254992
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || ||||||||| | ||||| || || || ||| | ||
Sbjct 84182 ATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 84123
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | ||||| || || ||||| || || || || || ||||| ||
Sbjct 84122 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCGACCAG 84063
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | |||||| || || | || || || ||| | || |||||||||
Sbjct 84062 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATTACAAC 84003
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| || | ||| | || |||| |||| ||||| ||
Sbjct 84002 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGCCTGCGTGGTGGTAT 83953
Score = 105 bits (116), Expect = 6e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
||||||||| | || ||||| || || || | ||||| | || || | || ||
Sbjct 84672 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACGTGAAGTCC 84613
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || || ||||| || ||||| || |||||||| |||||| | || | ||| |||||
Sbjct 84612 AAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 84553
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | || ||| | ||| | ||||| ||||||||||| |||||||| ||| | ||
Sbjct 84552 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 84493
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| | || | || ||||| ||
Sbjct 84492 TTGGTTCTCCGCCTTCGTGGTGGTAT 84467
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059
|| || || || || |||||| | || || || || || || | || || | || ||
Sbjct 84398 GTCAAGACGCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGATACTATCGAC 84339
Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119
| ||||| || ||||| || || || ||||| || || || || |||||||| ||
Sbjct 84338 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATC 84279
Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179
| || ||||| ||| | || || | ||| | ||||| ||||||||||| ||||||
Sbjct 84278 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAG 84219
Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || | || |||||| | ||| | || ||||| ||
Sbjct 84218 TCCACTCTCCACTTGGTTCTCCGTCTTCGCGGTGGTAT 84181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434913349510080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |