Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq230 91.5 1e-13
>seq230
Length=716270
Score = 91.5 bits (100), Expect = 1e-13
Identities = 192/281 (68%), Gaps = 8/281 (3%)
Strand=Plus/Plus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT---TC 34378
|| || ||||||||||||| | || || || || || || |||| ||| ||| ||
Sbjct 621535 GGTGTCAAGATCTGGGACGGCAATGGATCGCGCGAGTTCCTCGACA-GCGTCGGTCTTTC 621593
Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438
||| | || | | || ||| | || || || ||||| ||||| ||| | ||||||||
Sbjct 621594 CCACCGCG--AAGTCGGTGACCTCGGTCCCGTGTACGGCTTCCAATGGCGCCACTTTGGC 621651
Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTA 34497
|| ||||| || | | ||| |||| || |||| ||||| | ||||| ||| |
Sbjct 621652 GCCGAGTA-CGTCGACTCCAAGACGGATTACACGGGCCAGGGCGTCGACCAACTGGCCGA 621710
Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557
|| ||| ||| | ||| ||||||| | ||| | | ||| | | |||| |||||
Sbjct 621711 GGTCATCCACAAGCTCAAGACGAACCCTTACGACCGCCGCATCCTCCTTAGCGCCTGGAA 621770
Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598
||| ||| || |||||||||||| ||||||||||
Sbjct 621771 CCCAGCGGACCTGAAGAAGATGGCGCTCCCGCCGTGCCACA 621811
Score = 91.5 bits (100), Expect = 1e-13
Identities = 192/281 (68%), Gaps = 8/281 (3%)
Strand=Plus/Minus
Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806
|||||||||| |||||||||||| || ||| |||||||| |||| | | ||
Sbjct 621811 TGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGGTTCCAGGCGCTAAGGAGGA 621752
Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866
| | | ||| | ||||||| ||| | ||| ||| || | ||| ||||| | |
Sbjct 621751 TGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGC 621692
Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925
|||| |||| || |||| ||| | | || ||||| || |||||||| | ||| |||
Sbjct 621691 CCTGGCCCGTGTAATCCGTCTTGGAGTCGACG-TACTCGGCGCCAAAGTGGCGCCATTGG 621633
Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA---ACCCCCGCTTGTCC 6982
|| ||||| || || || | ||| || | | || | ||||| ||| ||| ||||
Sbjct 621632 AAGCCGTACACGGGACCGAGGTCACCGACTT--CGCGGTGGGAAAGACCGACGC-TGTCG 621576
Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
|| || || || || || | ||||||||||||| || ||
Sbjct 621575 AGGAACTCGCGCGATCCATTGCCGTCCCAGATCTTGACACC 621535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448257194552880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |