Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq230 91.5 1e-13 >seq230 Length=716270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 192/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT---TC 34378 || || ||||||||||||| | || || || || || || |||| ||| ||| || Sbjct 621535 GGTGTCAAGATCTGGGACGGCAATGGATCGCGCGAGTTCCTCGACA-GCGTCGGTCTTTC 621593 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 ||| | || | | || ||| | || || || ||||| ||||| ||| | |||||||| Sbjct 621594 CCACCGCG--AAGTCGGTGACCTCGGTCCCGTGTACGGCTTCCAATGGCGCCACTTTGGC 621651 Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTA 34497 || ||||| || | | ||| |||| || |||| ||||| | ||||| ||| | Sbjct 621652 GCCGAGTA-CGTCGACTCCAAGACGGATTACACGGGCCAGGGCGTCGACCAACTGGCCGA 621710 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 || ||| ||| | ||| ||||||| | ||| | | ||| | | |||| ||||| Sbjct 621711 GGTCATCCACAAGCTCAAGACGAACCCTTACGACCGCCGCATCCTCCTTAGCGCCTGGAA 621770 Query 34558 CCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 ||| ||| || |||||||||||| |||||||||| Sbjct 621771 CCCAGCGGACCTGAAGAAGATGGCGCTCCCGCCGTGCCACA 621811 Score = 91.5 bits (100), Expect = 1e-13 Identities = 192/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||||||||| |||||||||||| || ||| |||||||| |||| | | || Sbjct 621811 TGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGGTTCCAGGCGCTAAGGAGGA 621752 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 | | | ||| | ||||||| ||| | ||| ||| || | ||| ||||| | | Sbjct 621751 TGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGC 621692 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 |||| |||| || |||| ||| | | || ||||| || |||||||| | ||| ||| Sbjct 621691 CCTGGCCCGTGTAATCCGTCTTGGAGTCGACG-TACTCGGCGCCAAAGTGGCGCCATTGG 621633 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGA---ACCCCCGCTTGTCC 6982 || ||||| || || || | ||| || | | || | ||||| ||| ||| |||| Sbjct 621632 AAGCCGTACACGGGACCGAGGTCACCGACTT--CGCGGTGGGAAAGACCGACGC-TGTCG 621576 Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 || || || || || || | ||||||||||||| || || Sbjct 621575 AGGAACTCGCGCGATCCATTGCCGTCCCAGATCTTGACACC 621535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257194552880