Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq356 167 5e-36
seq477 134 3e-26
seq863 116 9e-21
seq572 91.5 3e-13
>seq356
Length=254992
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || ||||| ||||| || || ||||| ||||||| ||||| | |||||
Sbjct 83971 AGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCC 84030
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| | ||| || ||||| ||||||| || ||||| ||
Sbjct 84031 TCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCT 84090
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || |||||||| || |||||||||||| || ||||||
Sbjct 84091 TGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTC 84150
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 84151 TTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 143 bits (158), Expect = 6e-29
Identities = 167/223 (75%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | ||||| || || || || || || || ||||| || || || | ||| |
Sbjct 83733 ACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAG- 83791
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | |||||||||| |||||| || ||||||||||| || || ||||| ||||| | |
Sbjct 83792 TGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATAC 83851
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||||||||||||||| |||||||| || || |||||||| || || || |
Sbjct 83852 CCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCA 83911
Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||||||||| || || ||||| || || | ||||||
Sbjct 83912 ACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| || || ||||| || || ||||| || || | |||||
Sbjct 84475 ACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 84534
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| ||||| || || || || || || || || | ||
Sbjct 84535 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCC 84594
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| |||||||| |||||||| || ||| || ||||||||
Sbjct 84595 CTCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAG 84654
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
|||||| ||||| || ||||
Sbjct 84655 AGTGATGGTCTTGCCGGTGA 84674
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || | ||| ||||||||||| || || ||||| || || | |||||
Sbjct 84190 CGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 84249
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || || |||||||| || ||||| | || || |||||||| || | ||
Sbjct 84250 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCC 84309
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||| ||||| ||||| || || || ||||| || ||||| || ||||||||
Sbjct 84310 TCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGG 84369
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| ||||| || ||||| ||||| ||
Sbjct 84370 GTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398
>seq477
Length=261965
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | ||||| || ||||||||||| ||||||||
Sbjct 234213 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 234272
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
||||| || |||||||| || | || ||||||||||||||||| || || || |||
Sbjct 234273 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 234332
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 234333 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 234391
>seq863
Length=517823
Score = 116 bits (128), Expect = 9e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007
||||| | || || || |||||||| || |||||||| || || || ||||| || ||
Sbjct 7425 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGG 7366
Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067
| || ||||||||||||||||| || || || ||||||||||| || || |||
Sbjct 7365 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 7306
Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| ||||| || ||||| || || | ||||||
Sbjct 7305 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 7259
>seq572
Length=609512
Score = 91.5 bits (100), Expect = 3e-13
Identities = 182/270 (67%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145
|||| | |||||| ||||||||||| | | ||||| ||||| ||||||||
Sbjct 17425 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGT 17484
Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205
| || ||| | |||||| |||| ||| || |||||||| |||||| || ||||
Sbjct 17485 TGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGTCT 17544
Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265
| | || || || ||||||||| | ||| | ||||||| ||| || |||
Sbjct 17545 TGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGC 17604
Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325
||| | || || || |||||||||||| | ||| |||| | ||| | || |
Sbjct 17605 AGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGA 17664
Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGA 178355
||| |||||||| || || | | ||||||
Sbjct 17665 CTCTCTTCATGAACAGATCGGGGATCCAGA 17694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159138202831085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |