Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq230 111 1e-19
>seq230
Length=716270
Score = 111 bits (122), Expect = 1e-19
Identities = 444/697 (64%), Gaps = 69/697 (10%)
Strand=Plus/Minus
Query 27083 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 27142
|||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| |
Sbjct 622120 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 622061
Query 27143 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCC 27201
||| |||||||| ||| ||||||||| ||||| |||| | ||| | | || ||||
Sbjct 622060 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 622002
Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261
||| | || || | | || ||||||| ||| ||||| | ||||||||| |||||
Sbjct 622001 GGTACCAGGTCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGTAGCTGGCAATGTTG 621942
Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 27316
||||| || ||||| |||||||| | |||| |||||| | ||| || ||| |
Sbjct 621941 AAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAACTGGCAATGGAGGTGGCCC 621882
Query 27317 --------CTCCATCGCTT---------------------------------ACGTAAAA 27335
|||| ||| || ||||||||
Sbjct 621881 TTTGGCTTCTCC-TCGTTTGCGGGCGTTGCGCCGCGGGCTCGCGGGTACGAGACGTAAAA 621823
Query 27336 CTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392
||| | | ||| |||||||| || || ||||| || ||| ||||||||
Sbjct 621822 CTGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGGTTCCA 621766
Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 27452
||||| | || |||||| | ||| | ||||| || ||| || | | | |
Sbjct 621765 GGCGCTAAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGC 621706
Query 27453 CAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAA 27512
||| || || || ||| |||| ||| || | | ||| |||||| || || ||
Sbjct 621705 CAGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAA 621646
Query 27513 ATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 27572
|| | ||||||||| |||||||| || || ||||| || |||| | ||| ||| |
Sbjct 621645 GTGGCGCCATTGGAAGCCGTACACGGGACCGAGGTCACCGACTTCGCGGTG-GGAAAGAC 621587
Query 27573 CCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTC 27629
| | |||| | || || | || || ||| ||||||||||||| || || |||| |
Sbjct 621586 CGACGCTGTCGAGGAACTCGCGCGATCCATTGCCGTCCCAGATCTTGACACCGGCTTCGC 621527
Query 27630 ----GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 27685
|| |||| | || | ||| | ||||| |||||||||||| || || | | ||
Sbjct 621526 TCAGGGCGAGCGAT---GA-TGTGTTG-CCCTC-GACGAACCACAGGAGTTCGGCAATGA 621473
Query 27686 CGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722
| || ||||| | ||| || |||||||||||
Sbjct 621472 CTGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGG 621436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369503016370199
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |