Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq230 111 1e-19 >seq230 Length=716270 Score = 111 bits (122), Expect = 1e-19 Identities = 444/697 (64%), Gaps = 69/697 (10%) Strand=Plus/Minus Query 27083 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 27142 |||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| | Sbjct 622120 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 622061 Query 27143 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCC 27201 ||| |||||||| ||| ||||||||| ||||| |||| | ||| | | || |||| Sbjct 622060 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 622002 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 ||| | || || | | || ||||||| ||| ||||| | ||||||||| ||||| Sbjct 622001 GGTACCAGGTCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGTAGCTGGCAATGTTG 621942 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 27316 ||||| || ||||| |||||||| | |||| |||||| | ||| || ||| | Sbjct 621941 AAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAACTGGCAATGGAGGTGGCCC 621882 Query 27317 --------CTCCATCGCTT---------------------------------ACGTAAAA 27335 |||| ||| || |||||||| Sbjct 621881 TTTGGCTTCTCC-TCGTTTGCGGGCGTTGCGCCGCGGGCTCGCGGGTACGAGACGTAAAA 621823 Query 27336 CTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 ||| | | ||| |||||||| || || ||||| || ||| |||||||| Sbjct 621822 CTGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGGTTCCA 621766 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 27452 ||||| | || |||||| | ||| | ||||| || ||| || | | | | Sbjct 621765 GGCGCTAAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGC 621706 Query 27453 CAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAA 27512 ||| || || || ||| |||| ||| || | | ||| |||||| || || || Sbjct 621705 CAGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAA 621646 Query 27513 ATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 27572 || | ||||||||| |||||||| || || ||||| || |||| | ||| ||| | Sbjct 621645 GTGGCGCCATTGGAAGCCGTACACGGGACCGAGGTCACCGACTTCGCGGTG-GGAAAGAC 621587 Query 27573 CCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTC 27629 | | |||| | || || | || || ||| ||||||||||||| || || |||| | Sbjct 621586 CGACGCTGTCGAGGAACTCGCGCGATCCATTGCCGTCCCAGATCTTGACACCGGCTTCGC 621527 Query 27630 ----GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 27685 || |||| | || | ||| | ||||| |||||||||||| || || | | || Sbjct 621526 TCAGGGCGAGCGAT---GA-TGTGTTG-CCCTC-GACGAACCACAGGAGTTCGGCAATGA 621473 Query 27686 CGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 | || ||||| | ||| || ||||||||||| Sbjct 621472 CTGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGG 621436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369503016370199