Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq356 114 3e-20
seq863 96.9 8e-15
seq477 89.7 1e-12
>seq356
Length=254992
Score = 114 bits (126), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||| ||||| ||||| || || ||||||||||| | | || | |||||
Sbjct 83971 AGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCC 84030
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||||||||| | | ||||||||| | | || || ||||| |
Sbjct 84031 TCAAGCTGCTTT--CCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTAT 84088
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
|||| || || ||||| | || | | |||||||| || || || || ||||| |
Sbjct 84089 CTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCG 84148
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || || ||||| ||||| | ||||||
Sbjct 84149 TCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 104 bits (114), Expect = 5e-17
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| || || || || || ||||| ||||| ||| ||||| | |||||
Sbjct 83742 GAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATC 83801
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||| | ||||| || ||||||||||| | ||||||||| | | ||| || |||||
Sbjct 83802 TTCCAACTGCTTT--CCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTG 83859
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|| || || || || || | || | |||| || ||| ||||| | |||||
Sbjct 83860 TCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATC 83919
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || ||||| ||||||| ||||||
Sbjct 83920 GTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
>seq863
Length=517823
Score = 96.9 bits (106), Expect = 8e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| ||||||||||| || | ||||||||| | | ||| || ||||| || || || ||
Sbjct 7401 TTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 7342
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
|||||| | || | | |||| || ||| || ||||| || ||||| ||||||||
Sbjct 7341 GACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTC 7282
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| ||||||| ||||||
Sbjct 7281 AGGGTCTTGACGAAGATCTGCAT 7259
>seq477
Length=261965
Score = 89.7 bits (98), Expect = 1e-12
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | || | ||||| || || || || ||||||||
Sbjct 234213 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 234272
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||||||||| | | ||| || ||||| || || || || |||||| | ||
Sbjct 234273 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 234332
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| |||| || ||| || ||||| ||||| || || ||||| || |||||||||||
Sbjct 234333 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 234391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153807066287359
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |