Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq356 132 3e-26 seq477 113 3e-20 >seq356 Length=254992 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || || || || || |||||| || ||||||||||| Sbjct 83952 CATACCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATC 84011 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || |||||||| ||||| |||||||| |||||||| || | Sbjct 84012 CGACAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGG 84071 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| ||||| || |||||| ||| | | | |||||||| | ||||| Sbjct 84072 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTC 84131 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | |||||||||||| || || |||||||| ||||| || ||||| Sbjct 84132 AACCTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || || ||||| ||||| ||||| ||| | ||| | || ||| Sbjct 83746 ACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCC 83805 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||| | ||||||||| || | ||| | ||| ||||| ||| Sbjct 83806 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 83865 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| | || || || |||| ||||||||||||| Sbjct 83866 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTT 83925 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||| ||||| Sbjct 83926 CCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 Score = 100 bits (110), Expect = 2e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||| || |||||||| |||| || ||| | || || Sbjct 84202 ACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 84261 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||||||||||||| || | || | || ||||| ||| Sbjct 84262 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGA 84321 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | || || || | || || ||||| | || || |||| Sbjct 84322 ATCTTCGACTTGACATTGT--CGATAGTATCAGAAGACTCGACCTCGAGGGTGATGGTCT 84379 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || ||||| ||||| |||| Sbjct 84380 TGCCAGTGAGCGTCTTGACGA 84400 Score = 95.1 bits (104), Expect = 9e-15 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| || |||||||| |||| ||| ||| |||| || Sbjct 84488 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 84547 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || || | |||||||||||| | || | || ||||| ||| Sbjct 84548 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGG 84607 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||| |||| ||| || ||||| | || || ||||| Sbjct 84608 ATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTTG 84667 Query 44309 CCCGTGA 44315 || |||| Sbjct 84668 CCGGTGA 84674 >seq477 Length=261965 Score = 113 bits (124), Expect = 3e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| | || || |||||||| || || |||| Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||| || ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 234331 --CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 234388 Query 44326 GAA 44328 ||| Sbjct 234389 GAA 234391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986324121193