Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq356 147 5e-30 seq863 127 5e-24 >seq356 Length=254992 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || ||||| || |||||||| ||| |||||| Sbjct 84179 CAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAATCTTCAGAC 84120 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || || || || || || ||||| |||||||| Sbjct 84119 ACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCGACCAGCAG 84060 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || ||||| | || || | ||||| ||| | Sbjct 84059 CGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATTACAACATT 84000 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| |||||||| || Sbjct 83999 CAGAAGGAGTCAACTCTGCATCTCGT 83974 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| ||||| || | || || || || ||| Sbjct 83951 CAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACGTTGGAAGTCGAGTCATCTGAC 83892 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||| || || |||||||| |||||||| Sbjct 83891 ACGATTGATAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 83832 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||| | |||||||| | ||| | ||| || || || Sbjct 83831 CGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACTTTGAGCGACTACAATATC 83772 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || |||||||| || ||||| || Sbjct 83771 CAGAAGGAATCAACCCTCCATCTGGT 83746 Score = 107 bits (118), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || |||||||||||||| || || || || |||| Sbjct 84400 TCGTCAAGACGCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGATACTATCG 84341 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||||||||| || || || ||||| || |||||||| || | | Sbjct 84340 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGA 84281 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || || || || ||||| | || || |||| || ||| | || || | Sbjct 84280 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 84221 Query 178111 AATCAACACTGCATCTTGTTT 178131 | || || || || |||| || Sbjct 84220 AGTCCACTCTCCA-CTTGGTT 84201 >seq863 Length=517823 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||| |||||||| || ||| Sbjct 7262 CAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 7321 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 7322 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 7381 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || |||||||||||||| |||||||| || || Sbjct 7382 CGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGG 7416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203716872213226