Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq477 138 1e-27 seq863 132 4e-26 seq356 125 7e-24 seq121 89.7 5e-13 >seq477 Length=261965 Score = 138 bits (152), Expect = 1e-27 Identities = 147/191 (77%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| | || || ||||||||||| ||||| | Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||| ||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||| ||||| | || || || ||||||||||| ||||| || Sbjct 234331 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 234388 Query 41851 GAAAATCTGCA 41861 |||| ||||| Sbjct 234389 GAAA--CTGCA 234397 >seq863 Length=517823 Score = 132 bits (146), Expect = 4e-26 Identities = 135/174 (78%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 |||||||||||| |||| ||||||||||| |||||||| ||||| ||||| ||||| | Sbjct 7429 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGG 7370 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGAC 41809 ||| | || |||||||||| ||| || ||| || | || | |||||| |||| Sbjct 7369 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGAC 7312 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| | || || || || |||||||| ||||| ||||| ||||||||| Sbjct 7311 TCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 7258 >seq356 Length=254992 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || ||||||||||||||| || || || Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| |||||||| |||| |||||| ||||| | ||| Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| || ||| || ||| ||| | | | ||||| || || || Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTT-GACGTTGTCAATGGTGTCTGAAGATTCAAC 84134 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || || || ||||| |||||||||||||| Sbjct 84135 CTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 114 bits (126), Expect = 1e-20 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || || ||| ||||||||||||||| |||||||| Sbjct 84184 CCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 84243 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || |||||||| || || |||| ||||| ||||| | ||| Sbjct 84244 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 84303 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||| ||| ||| | || | ||| || | || | ||| || ||||| Sbjct 84304 ATGCCCTCCTTATCC-TGAATCTTCGACTTGACATTGTCG--ATAGTATCAGAAGACTCG 84360 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||||| | || || || || || || |||||||| |||| Sbjct 84361 ACCTCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 84400 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||| Sbjct 84505 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 84564 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 || || ||||| || || | ||| | || |||||||||| ||| || ||||| Sbjct 84565 AATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCA 84620 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||||||| || || |||||||| || || |||||| Sbjct 83727 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCT 83786 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || | |||||| || ||||| || || ||||| ||||| | || Sbjct 83787 CAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 83846 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||||| || || ||||| ||||| | Sbjct 83847 GATACCCTCCTTGTCCTGGATCTTGGACTTCA-CGTTATCAATCGTGTCAGATGACTCGA 83905 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| ||| ||||| || || ||||||||||| ||||| |||||||| Sbjct 83906 CTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 >seq121 Length=229515 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 85806 GCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCGAC 85865 || || || || ||||||||| |||| || |||||| |||||||| ||||||||| Sbjct 193008 GCTCCCCGCTCTGGCCTCGCCTCCAAGAACTTCATCGACACCGGCGCCGGCGTCATCGAC 193067 Query 85866 GCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||| | |||| || | ||||||||||||| ||| Sbjct 193068 GCCGACTACCGCGGCCAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 193114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298631494800