Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq933 125 2e-23 >seq933 Length=137956 Score = 125 bits (138), Expect = 2e-23 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 230284 TCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTA 230342 || |||||| ||||| ||| ||||||||||| || || | | |||| | || |||| Sbjct 11196 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCA-CACCGACTTCGCCTGCCTCCTGTA 11254 Query 230343 TTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGC 230399 || | ||| ||||| | ||| | || ||| | | | |||||| || || Sbjct 11255 CTCCCACCTCAAGAACCGCC--CCAG-CAAGCAGGTTATCGAGGACATCATTGTCGATGC 11311 Query 230400 AGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAA 230459 || | | || |||||||| | || || |||| || ||| |||||||||| Sbjct 11312 CGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAA 11371 Query 230460 CGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGG 230519 | | | || ||| |||||||| || ||||| ||||||||| | || ||||| ||||| Sbjct 11372 CTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGG 11431 Query 230520 TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCA 230579 |||| || || ||||| ||| |||||||| | ||||||||| || || || Sbjct 11432 CAACGACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGG 11491 Query 230580 AGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 || |||||||||||||| ||||||||||| ||||| || | | | || || ||||| Sbjct 11492 TGGCAAGACCAACTTCTTTGAAAAGCGTGTTGCCGACTACCAAAAGGCCGGCGTTATGAA 11551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057801975773750