Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq933 125 2e-23
>seq933
Length=137956
Score = 125 bits (138), Expect = 2e-23
Identities = 247/360 (69%), Gaps = 8/360 (2%)
Strand=Plus/Plus
Query 230284 TCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTA 230342
|| |||||| ||||| ||| ||||||||||| || || | | |||| | || ||||
Sbjct 11196 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCA-CACCGACTTCGCCTGCCTCCTGTA 11254
Query 230343 TTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGC 230399
|| | ||| ||||| | ||| | || ||| | | | |||||| || ||
Sbjct 11255 CTCCCACCTCAAGAACCGCC--CCAG-CAAGCAGGTTATCGAGGACATCATTGTCGATGC 11311
Query 230400 AGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAA 230459
|| | | || |||||||| | || || |||| || ||| ||||||||||
Sbjct 11312 CGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAA 11371
Query 230460 CGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGG 230519
| | | || ||| |||||||| || ||||| ||||||||| | || ||||| |||||
Sbjct 11372 CTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGG 11431
Query 230520 TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCA 230579
|||| || || ||||| ||| |||||||| | ||||||||| || || ||
Sbjct 11432 CAACGACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGG 11491
Query 230580 AGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
|| |||||||||||||| ||||||||||| ||||| || | | | || || |||||
Sbjct 11492 TGGCAAGACCAACTTCTTTGAAAAGCGTGTTGCCGACTACCAAAAGGCCGGCGTTATGAA 11551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057801975773750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |