Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq933 91.5 2e-13 >seq933 Length=137956 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/289 (67%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || ||||| || ||| | |||||||| ||||||||||| ||||| Sbjct 10916 ATGTAGGTGTCAATGAGCAGCGAGTAAGTCTCGGAGTGGATGTTCTCCATCATAATCTGG 10857 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| ||||| || | | |||||| || || ||| || || | | Sbjct 10856 AAGCCGTAGAAGCAGCGGGCCTCAGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAG 10797 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || || || |||||||||||| |||||||| || || | || ||| ||||| || Sbjct 10796 TTCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTAC 10737 Query 17414 TTTTCGTCCGGTGTAAGAAC-----GCGCCAGTCCTTTAAATCTTTGGATATATCCACTT 17468 || || ||| | || | | |||||| | | || || || | ||| | | Sbjct 10736 TTCTCATCC--TCATTGATCTTGTTGTTCCAGTCGTGCAGGTCCTTAGACAGATCAATCT 10679 Query 17469 CTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | || | |||||| ||| |||| | ||||| || ||||| | ||| || Sbjct 10678 CCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCAGAT 10630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517535087355000