Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq501 132 6e-26 seq933 95.1 1e-14 >seq501 Length=177797 Score = 132 bits (146), Expect = 6e-26 Identities = 436/673 (65%), Gaps = 16/673 (2%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || |||| || ||||| | | ||| ||||||| | | |||| ||||| Sbjct 147483 CCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATG 147424 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||||||||| ||||||||||| | || || || | || | || || || || Sbjct 147423 AAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCA 147364 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| ||||| | || | | | ||| | ||||| || || | || ||| Sbjct 147363 TGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATG 147304 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || || ||||| || ||||| || | ||| | ||| ||||||||| | Sbjct 147303 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAG 147244 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| |||| ||||| ||||| | |||||||| |||| || || || Sbjct 147243 ACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCG 147184 Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | || || || | ||| ||||| || || || ||||| || ||||| | || Sbjct 147183 GTAGCGCGGATGCGGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATTG 147126 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| || | || || || || ||||| ||| || || |||||| | || | Sbjct 147125 CGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGA 147066 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | || ||||| || | || || || || || | |||||||| ||||| | Sbjct 147065 AGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAG 147006 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT----AGCTGA--GTCTATATCCC 54512 | || | || || | || ||||| |||||||| ||| | || | ||| Sbjct 147005 TGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCC 146946 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 | |||| || || ||||||||||| | ||||||||| ||||| || | |||||| Sbjct 146945 A--GATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 146892 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 || | ||||| | ||| ||| | ||||| || || || || || || | ||| | Sbjct 146891 CGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGA 146832 Query 54633 AGTCTCGTTCGTA 54645 |||| || ||||| Sbjct 146831 AGTCGCGGTCGTA 146819 >seq933 Length=137956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| ||||||||||| | | || | |||||||| || || || Sbjct 11245 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 11186 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| ||||| ||||| || ||||| || ||||| || || | ||| |||||| Sbjct 11185 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 11126 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279 || || || || || || ||||||| Sbjct 11125 ATACCCTCGACAGCAGCGAAGGCAA 11101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709540030000