Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq933 170 2e-37 seq1045 145 8e-30 seq1103 114 1e-20 seq1539 102 8e-17 >seq933 Length=137956 Score = 170 bits (188), Expect = 2e-37 Identities = 209/285 (73%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | || ||| Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAAC---GACAACGAGCGCCATTTCATCAAG 116752 || |||||| | ||||||| | | || | || | ||| | |||||| | Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 10749 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| |||||||| ||||||||||||||| ||||| |||||||||| Sbjct 10750 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 10809 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| || ||| | ||||| || |||||||||||||| ||||| ||| Sbjct 10810 TTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGATG 10869 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || ||| ||||| ||||| ||| Sbjct 10870 GAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTAC 10914 Score = 170 bits (188), Expect = 2e-37 Identities = 314/455 (69%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| || ||||| || |||| | || |||||| |||| Sbjct 11038 AGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGAT-GAGAAGTCCTCCTTCGCTCAGCGT 11096 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 |||| |||||||| || |||||||| | ||||| || |||||| |||| || Sbjct 11097 TTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTTC 11156 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||| | Sbjct 11157 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCGT 11216 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 |||||||||||||| |||||| ||||| | |||| | || | | | || || Sbjct 11217 GACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTCCCACCTCAAGAACCGCCCC 11276 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | || ||| ||| | ||| || ||| || |||||| ||||| Sbjct 11277 AGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTTCCTG 11336 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 || || || || || |||| ||||| || | || | | | |||| ||| ||||| Sbjct 11337 ACGGAGGCCCTTCC-TTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACAT 11395 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||||||||| | || || | | || | | || |||| ||||| | | Sbjct 11396 TGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGGCAACGACAAGGTTTACAAGTCTTC 11455 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||||||| | |||||| ||| Sbjct 11456 CAACCCCTTCGACTTTATGGAGAATATCTCCCTGG 11490 >seq1045 Length=66817 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 49905 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 49846 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| |||||||| |||||||||| Sbjct 49845 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 49786 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || || || ||| |||| Sbjct 49785 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCG 49751 >seq1103 Length=171845 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 93209 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGATC 93268 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || | Sbjct 93269 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 93328 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 93329 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 93388 Query 40879 G 40879 | Sbjct 93389 G 93389 >seq1539 Length=122776 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | || || || || || || | || || || | | Sbjct 51050 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 51109 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | ||| || || | ||||| |||||||||||| | || || Sbjct 51110 GACACGATTGACAATGTT-AAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCA 51168 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | || || || || |||| |||| |||||||| | ||| ||||| Sbjct 51169 GCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAA 51228 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | ||||| || || || | || || | ||||| Sbjct 51229 CATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGG 51276 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 |||| | |||| || || || || ||||| |||||||| |||| || || || | || Sbjct 50597 CAAACAGTCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGAT 50656 Query 40753 AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAA 40812 | | | | | ||||| || |||| ||||| || |||||||| | || |||||| Sbjct 50657 ACCATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAA 50716 Query 40813 CGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 40872 || | |||| || ||||| ||||| || || | ||||| ||| |||||||||||| Sbjct 50717 CGCTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATC 50776 Query 40873 CAGAAGGAGGCCACGCTGCA 40892 || ||||| |||| || || Sbjct 50777 CAAAAGGAATCCACCCTTCA 50796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || ||||| | || |||||| | | Sbjct 50822 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 50881 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| |||||||| || | ||||| Sbjct 50882 GACACGATCGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 50940 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || || |||||||| || | ||||| | |||||||| Sbjct 50941 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAA 51000 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 51001 CATTCAGAAGGAGTCAACTCTTCACCTTGT 51030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208734610000