Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq933 170 2e-37
seq1045 145 8e-30
seq1103 114 1e-20
seq1539 102 8e-17
>seq933
Length=137956
Score = 170 bits (188), Expect = 2e-37
Identities = 209/285 (73%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| |||||| | || |||
Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAAC---GACAACGAGCGCCATTTCATCAAG 116752
|| |||||| | ||||||| | | || | || | ||| | |||||| |
Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 10749
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | || ||||| |||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 10750 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 10809
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| || ||| | ||||| || |||||||||||||| ||||| |||
Sbjct 10810 TTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGATG 10869
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || ||| ||||| ||||| |||
Sbjct 10870 GAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTAC 10914
Score = 170 bits (188), Expect = 2e-37
Identities = 314/455 (69%), Gaps = 4/455 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040
|||||||||| ||||| || ||||| || |||| | || |||||| ||||
Sbjct 11038 AGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGAT-GAGAAGTCCTCCTTCGCTCAGCGT 11096
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
|||| |||||||| || |||||||| | ||||| || |||||| |||| ||
Sbjct 11097 TTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTTC 11156
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||| |
Sbjct 11157 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCGT 11216
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|||||||||||||| |||||| ||||| | |||| | || | | | || ||
Sbjct 11217 GACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTCCCACCTCAAGAACCGCCCC 11276
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | | || ||| ||| | ||| || ||| || |||||| |||||
Sbjct 11277 AGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGTTCCTG 11336
Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
|| || || || || |||| ||||| || | || | | | |||| ||| |||||
Sbjct 11337 ACGGAGGCCCTTCC-TTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACAT 11395
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||||||||||||| | || || | | || | | || |||| ||||| | |
Sbjct 11396 TGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGGCAACGACAAGGTTTACAAGTCTTC 11455
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
|||||| | ||||||||| | |||||| |||
Sbjct 11456 CAACCCCTTCGACTTTATGGAGAATATCTCCCTGG 11490
>seq1045
Length=66817
Score = 145 bits (160), Expect = 8e-30
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 49905 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 49846
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || |||| |||||||| ||||||||||
Sbjct 49845 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 49786
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| |||| || || || ||| ||||
Sbjct 49785 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCG 49751
>seq1103
Length=171845
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 93209 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCAGACACGATC 93268
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| | |||||||| || |
Sbjct 93269 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 93328
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | ||||||||| |||||||||||||||||||
Sbjct 93329 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 93388
Query 40879 G 40879
|
Sbjct 93389 G 93389
>seq1539
Length=122776
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || ||| | || || || || || || | || || || | |
Sbjct 51050 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 51109
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || || | | ||| || || | ||||| |||||||||||| | || ||
Sbjct 51110 GACACGATTGACAATGTT-AAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCA 51168
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | || || || || |||| |||| |||||||| | ||| |||||
Sbjct 51169 GCAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAA 51228
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||| | ||||| || || || | || || | |||||
Sbjct 51229 CATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGG 51276
Score = 100 bits (110), Expect = 3e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752
|||| | |||| || || || || ||||| |||||||| |||| || || || | ||
Sbjct 50597 CAAACAGTCGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCTGAT 50656
Query 40753 AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAA 40812
| | | | | ||||| || |||| ||||| || |||||||| | || ||||||
Sbjct 50657 ACCATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAA 50716
Query 40813 CGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 40872
|| | |||| || ||||| ||||| || || | ||||| ||| ||||||||||||
Sbjct 50717 CGCTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCGGACTACAACATC 50776
Query 40873 CAGAAGGAGGCCACGCTGCA 40892
|| ||||| |||| || ||
Sbjct 50777 CAAAAGGAATCCACCCTTCA 50796
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || || || ||||| | || |||||| | |
Sbjct 50822 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 50881
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || |||| ||||| |||||||| || | |||||
Sbjct 50882 GACACGATCGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCA 50940
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | ||| || || |||||||| || | ||||| | ||||||||
Sbjct 50941 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAA 51000
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| | || || || || ||
Sbjct 51001 CATTCAGAAGGAGTCAACTCTTCACCTTGT 51030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515208734610000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |