Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1045 120 3e-22 seq1539 111 1e-19 seq1103 86.0 5e-12 >seq1045 Length=66817 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| ||| || ||||| || Sbjct 49753 CAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 49812 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| ||||| ||| |||| || |||||||| ||||| || |||||||||||||| Sbjct 49813 CTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 49872 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | || Sbjct 49873 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGT 49932 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || || ||||||||| Sbjct 49933 CTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 49966 >seq1539 Length=122776 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || || |||||| ||| || ||||| ||||| Sbjct 51018 GTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCG 50959 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||||||||| |||||||| |||||||||||||| ||| || || Sbjct 50958 GCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTC 50899 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| ||||||| || | |||||||| | || | || || || |||| || Sbjct 50898 ACGTTGTCGATCGTGTCCGATGAT-TCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGT 50840 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 50839 CTTGACGAAGATCTGCAT 50822 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||||||||||| ||||| ||||| | || |||||| Sbjct 51246 GTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCA 51187 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | ||||||||||||||||| || || ||||||||||||||| || || ||| Sbjct 51186 GCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTA 51127 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| ||| ||||| | || | || || || |||| || Sbjct 51126 ACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTC 51067 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 51066 TTGACGAAGATTTGCAT 51050 Score = 105 bits (116), Expect = 6e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || ||||| ||||| ||| | ||||| ||||| Sbjct 50524 CACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTC 50465 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| ||||||||||| |||||||| || ||||||||||| Sbjct 50464 AAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 50405 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| || || | | ||||||||| | || | || || Sbjct 50404 AATCTTGGACTTCACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTT 50345 Query 118709 GCCGGT 118714 |||||| Sbjct 50344 GCCGGT 50339 >seq1103 Length=171845 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| |||||||||||| || || ||| |||| Sbjct 93387 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 93328 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 93327 AAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 93268 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||| | | ||||||||| | ||| | || || || ||||| || || || ||| Sbjct 93267 ATCGTGTCTGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 93208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821808124500