Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq501 127 4e-24
seq552 96.9 7e-15
>seq501
Length=177797
Score = 127 bits (140), Expect = 4e-24
Identities = 348/526 (66%), Gaps = 13/526 (2%)
Strand=Plus/Plus
Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892
||||| || |||||| |||||| ||||| || |||| |||||||| | || ||
Sbjct 146852 TTCAAGACCTTGGAGAGATCGTACCTCCTGAAGCTTGACGGCAAGATTGCCGAGAGACCC 146911
Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTG 248949
||||||||| | ||||| || ||||| || || | || ||||| | ||| ||||
Sbjct 146912 CAGCACATGATCATGCGTGTCGCTGTTGGCAT---CTGGGGTGACAACGTTGAGCGCGTC 146968
Query 248950 CTCGAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTT 249008
||||||| |||| | ||| | | | | | | || || ||| | || || |||||
Sbjct 146969 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT-TCACTCACGCCTCTCCTACACTCTT 147027
Query 249009 CAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGA 249068
|||||| |||||| | | |||||| || ||||| ||| | | |||| |||| ||
Sbjct 147028 CAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGA 147087
Query 249069 CTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGG 249127
|||| |||| || ||||| ||||| || || || | || | ||| || || | || |
Sbjct 147088 CTCTATCGAGGGTATTTACGACACCCTCAAGACCTGC-GCAATGATCTCCAAGATGGCTG 147146
Query 249128 GCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAA 249187
| || || |||||| |||| | |||||| || | || || ||||| || || |
Sbjct 147147 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCA 147206
Query 249188 ATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCA 249247
|||| | | |||||||| ||| | || || |||| | ||| || ||| |
Sbjct 147207 ATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACG 147266
Query 249248 TCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACG 249304
|| |||||| || | || || | || ||||| ||| | || |||||||
Sbjct 147267 TCGACCAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACG 147326
Query 249305 CCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350
||||| | || || || | || || |||||| | ||||| ||
Sbjct 147327 CCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGA 147372
>seq552
Length=29803
Score = 96.9 bits (106), Expect = 7e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 254022 GGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGGGC 254081
|| || || || || |||||||| || || ||||| || ||||| ||| | | | ||
Sbjct 15737 GGACCCCCGGGGACGGGCAAGACATCGACAATCCTCGCTCTGGCGCGACGCATTTACGGT 15678
Query 254082 GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGAC 254141
| || ||||||| || || || |||||||||||||| || ||||| ||||| | ||
Sbjct 15677 GCGGAGAACATGCGACAGATGGTCCTCGAGCTGAACGCCTCGGACGACCGCGGCATCGAT 15618
Query 254142 GTCGTCCGCGACAAGATCAAGACTTT 254167
||||| ||||| |||||||||| ||
Sbjct 15617 GTCGTGCGCGAGCAGATCAAGACGTT 15592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073744043848000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |