Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq501 127 4e-24 seq552 96.9 7e-15 >seq501 Length=177797 Score = 127 bits (140), Expect = 4e-24 Identities = 348/526 (66%), Gaps = 13/526 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || |||||| |||||| ||||| || |||| |||||||| | || || Sbjct 146852 TTCAAGACCTTGGAGAGATCGTACCTCCTGAAGCTTGACGGCAAGATTGCCGAGAGACCC 146911 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTG 248949 ||||||||| | ||||| || ||||| || || | || ||||| | ||| |||| Sbjct 146912 CAGCACATGATCATGCGTGTCGCTGTTGGCAT---CTGGGGTGACAACGTTGAGCGCGTC 146968 Query 248950 CTCGAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTT 249008 ||||||| |||| | ||| | | | | | | || || ||| | || || ||||| Sbjct 146969 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT-TCACTCACGCCTCTCCTACACTCTT 147027 Query 249009 CAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGA 249068 |||||| |||||| | | |||||| || ||||| ||| | | |||| |||| || Sbjct 147028 CAACGCTGGTACCCCCCAAGCACAGCTGTCTTCTTGCTTCCTTGTCGACATGAAAGAGGA 147087 Query 249069 CTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGG 249127 |||| |||| || ||||| ||||| || || || | || | ||| || || | || | Sbjct 147088 CTCTATCGAGGGTATTTACGACACCCTCAAGACCTGC-GCAATGATCTCCAAGATGGCTG 147146 Query 249128 GCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAA 249187 | || || |||||| |||| | |||||| || | || || ||||| || || | Sbjct 147147 GTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCCGGCACCA 147206 Query 249188 ATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCA 249247 |||| | | |||||||| ||| | || || |||| | ||| || ||| | Sbjct 147207 ATGGCACCTCCAACGGTATCGTTCCCATGCTCCGTGTCTTTAATAACACTGCTCGGTACG 147266 Query 249248 TCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACG 249304 || |||||| || | || || | || ||||| ||| | || ||||||| Sbjct 147267 TCGACCAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACG 147326 Query 249305 CCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 ||||| | || || || | || || |||||| | ||||| || Sbjct 147327 CCGATGTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGA 147372 >seq552 Length=29803 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 254022 GGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGGGC 254081 || || || || || |||||||| || || ||||| || ||||| ||| | | | || Sbjct 15737 GGACCCCCGGGGACGGGCAAGACATCGACAATCCTCGCTCTGGCGCGACGCATTTACGGT 15678 Query 254082 GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGAC 254141 | || ||||||| || || || |||||||||||||| || ||||| ||||| | || Sbjct 15677 GCGGAGAACATGCGACAGATGGTCCTCGAGCTGAACGCCTCGGACGACCGCGGCATCGAT 15618 Query 254142 GTCGTCCGCGACAAGATCAAGACTTT 254167 ||||| ||||| |||||||||| || Sbjct 15617 GTCGTGCGCGAGCAGATCAAGACGTT 15592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073744043848000