Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 131 1e-25
seq1539 113 4e-20
>seq1045
Length=66817
Score = 131 bits (144), Expect = 1e-25
Identities = 160/217 (74%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| |||||||||||| ||| ||| |||| ||
Sbjct 49757 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 49816
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| |||| ||||| |||||||| || | ||||||||||||
Sbjct 49817 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 49876
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| ||||||||| | ||| || |||||
Sbjct 49877 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 49936
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343
||||| || |||||||| ||||| |||||| ||||||
Sbjct 49937 CCCGTGAGGGTCTTCACGAAGATCTGCATGATTGCCT 49973
>seq1539
Length=122776
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||||||||||||||| || |||| | || ||||| || |||||||||||
Sbjct 51013 CTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 50954
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| ||||| ||||||||||| | |||||||||||| ||| || ||| ||
Sbjct 50953 AATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTT 50894
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | ||||| || ||||||| || || ||||| || |||| ||||| ||
Sbjct 50893 GTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGAC 50834
Query 45325 AAAGATTTGCAT 45336
||||| |||||
Sbjct 50833 GAAGATCTGCAT 50822
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| ||||| ||||||||| |||||||| ||| |||| |||| |||| |||| |||
Sbjct 51253 GTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTG 51194
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| || || || | ||||| || || || || | ||||||||||| || ||
Sbjct 51193 CTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTT 51134
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
|||||| | | ||||| | ||| ||||||| ||||| ||||| || ||
Sbjct 51133 CGACTTAACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGT 51074
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || |||||||||||
Sbjct 51073 CAACGTCTTGACGAAGATTTGCAT 51050
Score = 100 bits (110), Expect = 2e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| |||||||||||| ||||||||| || |||| |||| ||
Sbjct 50523 ACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTCA 50464
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | ||||| ||||||||||| | ||||||||||||| |
Sbjct 50463 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGA 50404
Query 45248 ATTTT 45252
|| ||
Sbjct 50403 ATCTT 50399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395067375659125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |