Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1045 131 1e-25 seq1539 113 4e-20 >seq1045 Length=66817 Score = 131 bits (144), Expect = 1e-25 Identities = 160/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| ||| |||| || Sbjct 49757 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 49816 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| |||||||| || | |||||||||||| Sbjct 49817 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 49876 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||| | ||| || ||||| Sbjct 49877 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 49936 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 ||||| || |||||||| ||||| |||||| |||||| Sbjct 49937 CCCGTGAGGGTCTTCACGAAGATCTGCATGATTGCCT 49973 >seq1539 Length=122776 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || |||| | || ||||| || ||||||||||| Sbjct 51013 CTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 50954 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||||||||| | |||||||||||| ||| || ||| || Sbjct 50953 AATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTT 50894 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | ||||| || ||||||| || || ||||| || |||| ||||| || Sbjct 50893 GTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGAC 50834 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 50833 GAAGATCTGCAT 50822 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| |||||||| ||| |||| |||| |||| |||| ||| Sbjct 51253 GTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTG 51194 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || || | ||||| || || || || | ||||||||||| || || Sbjct 51193 CTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTT 51134 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | ||||| | ||| ||||||| ||||| ||||| || || Sbjct 51133 CGACTTAACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGT 51074 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||||||||| Sbjct 51073 CAACGTCTTGACGAAGATTTGCAT 51050 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||| ||||||||| || |||| |||| || Sbjct 50523 ACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTCA 50464 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||||||||| | ||||||||||||| | Sbjct 50463 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGA 50404 Query 45248 ATTTT 45252 || || Sbjct 50403 ATCTT 50399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067375659125