Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq501 439 2e-118 seq933 143 2e-29 seq1539 107 2e-18 seq1045 105 6e-18 >seq501 Length=177797 Score = 439 bits (486), Expect = 2e-118 Identities = 1212/1848 (66%), Gaps = 38/1848 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||||||||||||||| | |||||| | || || || Sbjct 148635 GTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTG 148576 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | |||| | ||||| | || | ||||| ||| ||||| Sbjct 148575 GTGATCTTGCCCATAGTCGGGTCCTTCATGTGGATGTTAAGGGACTGCGACTGGTCGATG 148516 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | || | |||||| || |||||||| || ||| Sbjct 148515 AAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGAGATTTCCCAAACAGTC 148456 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 ||||||| | | | | ||| || || ||| |||||| || ||||| | | Sbjct 148455 TTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCG 148396 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | |||| ||||| ||| ||| || | || || | Sbjct 148395 GCAATGATACGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAG 148336 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504 || | |||| || |||||||||||||| | | ||| || ||||||||||||||||| Sbjct 148335 AGCCAAGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAG 148276 Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | || ||||| | |||||||| |||| ||||||| ||| || |||||||| Sbjct 148275 GTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATG 148216 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCG 22622 ||||| | || || ||||| | | ||||||| |||| | | || |||| || Sbjct 148215 GGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTC- 148157 Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGC 22682 ||||||||| ||||| || ||| | ||||| |||||| ||||| || | | ||| Sbjct 148156 -CCAGTCCCAGAGATCCGAGGGCTTAACATT---CCACATGTCGTACTGGAGAATGCCCT 148101 Query 22683 GACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC 22742 || | ||| || |||||||| | ||| ||||| | | || | | ||| | Sbjct 148100 GAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCACC 148042 Query 22743 TCGCCTCCAACGCGCCGTAA--TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC 22800 | | | | || | | || || |||||||| || |||||||| | || || Sbjct 148041 GA-CATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGC 147983 Query 22801 ----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAA 22856 || ||| ||| | ||||| || | || ||| || ||||| | |||||| | Sbjct 147982 TTCAGGAGAC----TCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCA 147927 Query 22857 CGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGA 22912 | || | ||| || || |||| || || || |||| ||| | | || Sbjct 147926 CACCGAGACCAATGGGGCGGTGGCGCATGTTG----CTGTTGCGGGCCTCCTGGACCGGG 147871 Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972 || || ||| || ||||||| | ||| | |||| | || | Sbjct 147870 TAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGG 147811 Query 22973 NNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAG 23029 | |||||||| || ||| ||||| |||| || || | ||| | |||| Sbjct 147810 AGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCGAG 147751 Query 23030 GCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGA 23089 || || || || || || |||||||| | | |||||| | || || || || || Sbjct 147750 GCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGG 147691 Query 23090 TTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 ||| |||| || || |||| || ||||||||||||| || ||| | |||| Sbjct 147690 TTGGAGCTACGG---ATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCC 147634 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || |||| |||||| || | ||||| ||| || ||| | Sbjct 147633 TTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGC 147574 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACC-TGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 | || || | || | ||| || || |||| | |||||||| | ||| || || Sbjct 147573 TTTTGGGCCTTAAGA-GTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGC 147515 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || ||||||| |||||||| || || || | | | || ||||| ||| | Sbjct 147514 CTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGT 147455 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| | || ||||| || | |||| || ||||| || ||||| ||||| ||| Sbjct 147454 CCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAA 147395 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || || |||||||| ||||| || ||||| |||||| || ||| |||||||| || Sbjct 147394 AAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAA 147335 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 || || || ||||| |||||||| || | |||||| || || || | ||| ||||| || Sbjct 147334 GACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 147275 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| |||||||| || || ||||| || | || | ||||| || |||| ||||||||| Sbjct 147274 CTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGA 147215 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| ||| || | || || | || || | | ||| |||| || ||| Sbjct 147214 GGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACC 147155 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 ||||| || || || || ||||| ||||| || || |||||||| || ||||| Sbjct 147154 AATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 147095 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 ||| ||||||||| | |||| | ||| || ||||||| || |||| ||| ||| | Sbjct 147094 GATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACC 147035 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 || ||| ||||| || |||||| || ||| | ||||||| || ||||| || Sbjct 147034 AGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGT 146975 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 |||||| || |||| || || || || || | ||||| ||||| ||||||| Sbjct 146974 CTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCAACAGCGACACGCATGATCATGTG 146915 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 || ||||||||| | | ||||| || || | || || || | | || || || Sbjct 146914 CTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTT 146855 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || || | ||||| ||||| || |||| || ||||| || Sbjct 146854 GAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGA 146807 >seq933 Length=137956 Score = 143 bits (158), Expect = 2e-29 Identities = 357/535 (67%), Gaps = 18/535 (3%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | |||| ||||| | | | | || | ||||| || | Sbjct 11036 CAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCTCAGCG 11095 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 | | || ||||| || ||||| ||||| ||||| || ||| || | || || Sbjct 11096 TTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTT 11155 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| |||||||| |||||||| ||||| || ||||||| | || || || Sbjct 11156 CTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCG 11215 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 ||||||||||| || || || || || ||||| ||||||| ||| |||| |||| Sbjct 11216 TGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTCCCAC---CTCAA-GAACC 11271 Query 58154 GACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | || ||| |||||| || ||| || ||| ||| || | ||| Sbjct 11272 GCCCCAGCA-AGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAG 11330 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | || || ||||| || ||| |||| || |||||| | ||||| || Sbjct 11331 TTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAG 11390 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTA 58324 ||||||||||| || |||||| | || ||| | | || |||| | || || ||| Sbjct 11391 TACATTGAGTTCGTCGCCGACCGCCTCTTGGTTG--CT-CTTGG-CAACGACAAGGTTTA 11446 Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384 ||| | || || || || |||||| | ||||| || | |||||||| ||||| Sbjct 11447 CAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTT 11506 Query 58385 TTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439 || ||||| ||| ||| || ||||| |||||| |||| | | | |||| Sbjct 11507 CTTTGAAAAGCGTGTTGCCGACTACCAAAAGGCCGGCGTTATGAACAGCACCAAG 11561 Score = 95.1 bits (104), Expect = 1e-14 Identities = 197/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| || || | || ||| Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 |||||||| ||| ||| ||| | | |||| || ||||| | || || Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 10749 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || |||||||| ||||| || || || || ||||| |||||||| | Sbjct 10750 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 10809 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || |||||| | ||||| | ||||| ||||| || || | || Sbjct 10810 TTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGATG 10869 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || ||| | || || || | || ||||| ||||| || || ||| | ||||| Sbjct 10870 GAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGA 10922 >seq1539 Length=122776 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || ||||| | || || ||| | || Sbjct 50822 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 50881 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || ||||||||| Sbjct 50882 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 50941 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||| || || ||| ||||||| | ||| || || || ||| Sbjct 50942 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 51001 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || |||||||| || || ||| | ||| | || |||| Sbjct 51002 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGGTA 51050 Score = 104 bits (114), Expect = 2e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| || || || || || | || ||||| | || Sbjct 51050 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 51109 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||||| ||| | || || || ||| Sbjct 51110 GACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 51169 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || || ||||| ||| | || |||||||||| ||| Sbjct 51170 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAAC 51229 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AG-AAGCGGTG 31430 || || || || || || ||||| || || || | ||| | |||||| || ||||| || Sbjct 51230 ATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCAGTAAGCGATG 51289 Query 31431 ACGTCG 31436 | ||| Sbjct 51290 GCTTCG 51295 >seq1045 Length=66817 Score = 105 bits (116), Expect = 6e-18 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 49970 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 49911 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 49910 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 49851 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| | || ||| || || ||| | Sbjct 49850 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 49791 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423 | ||||| || || || || ||||| || ||||| || | ||| | || ||| ||| Sbjct 49790 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGTGGTAAGA 49731 Query 31424 AGCG 31427 |||| Sbjct 49730 AGCG 49727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757345370000