Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq501 439 2e-118
seq933 143 2e-29
seq1539 107 2e-18
seq1045 105 6e-18
>seq501
Length=177797
Score = 439 bits (486), Expect = 2e-118
Identities = 1212/1848 (66%), Gaps = 38/1848 (2%)
Strand=Plus/Minus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
||||| || || |||||||||||||||||||| | |||||| | || || ||
Sbjct 148635 GTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAGCCAGCGAAGTGCATGCTG 148576
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || | |||| | ||||| | || | ||||| ||| |||||
Sbjct 148575 GTGATCTTGCCCATAGTCGGGTCCTTCATGTGGATGTTAAGGGACTGCGACTGGTCGATG 148516
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || || || ||||| ||||| | || | |||||| || |||||||| || |||
Sbjct 148515 AAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGAGATTTCCCAAACAGTC 148456
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384
||||||| | | | | ||| || || ||| |||||| || ||||| | |
Sbjct 148455 TTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCG 148396
Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444
||||| || || || | |||| ||||| ||| ||| || | || || |
Sbjct 148395 GCAATGATACGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACGAGGTCCTTCAAG 148336
Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504
|| | |||| || |||||||||||||| | | ||| || |||||||||||||||||
Sbjct 148335 AGCCAAGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAG 148276
Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564
||| | || ||||| | |||||||| |||| ||||||| ||| || ||||||||
Sbjct 148275 GTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATG 148216
Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCG 22622
||||| | || || ||||| | | ||||||| |||| | | || |||| ||
Sbjct 148215 GGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCGTC- 148157
Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGC 22682
||||||||| ||||| || ||| | ||||| |||||| ||||| || | | |||
Sbjct 148156 -CCAGTCCCAGAGATCCGAGGGCTTAACATT---CCACATGTCGTACTGGAGAATGCCCT 148101
Query 22683 GACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC 22742
|| | ||| || |||||||| | ||| ||||| | | || | | ||| |
Sbjct 148100 GAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACT-GCACC 148042
Query 22743 TCGCCTCCAACGCGCCGTAA--TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC 22800
| | | | || | | || || |||||||| || |||||||| | || ||
Sbjct 148041 GA-CATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGC 147983
Query 22801 ----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAA 22856
|| ||| ||| | ||||| || | || ||| || ||||| | |||||| |
Sbjct 147982 TTCAGGAGAC----TCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCA 147927
Query 22857 CGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGA 22912
| || | ||| || || |||| || || || |||| ||| | | ||
Sbjct 147926 CACCGAGACCAATGGGGCGGTGGCGCATGTTG----CTGTTGCGGGCCTCCTGGACCGGG 147871
Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972
|| || ||| || ||||||| | ||| | |||| | || |
Sbjct 147870 TAGTGGTTGACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGG 147811
Query 22973 NNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAG 23029
| |||||||| || ||| ||||| |||| || || | ||| | ||||
Sbjct 147810 AGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACGAATGTGGGCAAGGCAAGCGAG 147751
Query 23030 GCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGA 23089
|| || || || || || |||||||| | | |||||| | || || || || ||
Sbjct 147750 GCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAGAGG 147691
Query 23090 TTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
||| |||| || || |||| || ||||||||||||| || ||| | ||||
Sbjct 147690 TTGGAGCTACGG---ATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCC 147634
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || |||| |||||| || | ||||| ||| || ||| |
Sbjct 147633 TTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGC 147574
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACC-TGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
| || || | || | ||| || || |||| | |||||||| | ||| || ||
Sbjct 147573 TTTTGGGCCTTAAGA-GTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTATAAGGC 147515
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
|| || || ||||||| |||||||| || || || | | | || ||||| ||| |
Sbjct 147514 CTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGT 147455
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| | || ||||| || | |||| || ||||| || ||||| ||||| |||
Sbjct 147454 CCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAA 147395
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
|| || |||||||| ||||| || ||||| |||||| || ||| |||||||| ||
Sbjct 147394 AAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAA 147335
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
|| || || ||||| |||||||| || | |||||| || || || | ||| ||||| ||
Sbjct 147334 GACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 147275
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| |||||||| || || ||||| || | || | ||||| || |||| |||||||||
Sbjct 147274 CTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGTTGGA 147215
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
| ||| ||| || | || || | || || | | ||| |||| || |||
Sbjct 147214 GGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACC 147155
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
||||| || || || || ||||| ||||| || || |||||||| || |||||
Sbjct 147154 AATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 147095
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745
||| ||||||||| | |||| | ||| || ||||||| || |||| ||| ||| |
Sbjct 147094 GATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACC 147035
Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805
|| ||| ||||| || |||||| || ||| | ||||||| || ||||| ||
Sbjct 147034 AGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGTTGTAGGT 146975
Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865
|||||| || |||| || || || || || | ||||| ||||| |||||||
Sbjct 146974 CTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCAACAGCGACACGCATGATCATGTG 146915
Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925
|| ||||||||| | | ||||| || || | || || || | | || || ||
Sbjct 146914 CTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTT 146855
Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| || || || | ||||| ||||| || |||| || ||||| ||
Sbjct 146854 GAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGA 146807
>seq933
Length=137956
Score = 143 bits (158), Expect = 2e-29
Identities = 357/535 (67%), Gaps = 18/535 (3%)
Strand=Plus/Plus
Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973
||||||||| || ||| | |||| ||||| | | | | || | ||||| || |
Sbjct 11036 CAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCTCAGCG 11095
Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033
| | || ||||| || ||||| ||||| ||||| || ||| || | || ||
Sbjct 11096 TTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTT 11155
Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093
||| | ||||| |||||||| |||||||| ||||| || ||||||| | || || ||
Sbjct 11156 CTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCG 11215
Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153
||||||||||| || || || || || ||||| ||||||| ||| |||| ||||
Sbjct 11216 TGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTCCCAC---CTCAA-GAACC 11271
Query 58154 GACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208
| | | | | || ||| |||||| || ||| || ||| ||| || | |||
Sbjct 11272 GCCCCAGCA-AGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAG 11330
Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268
|| | || || ||||| || ||| |||| || |||||| | ||||| ||
Sbjct 11331 TTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAG 11390
Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTA 58324
||||||||||| || |||||| | || ||| | | || |||| | || || |||
Sbjct 11391 TACATTGAGTTCGTCGCCGACCGCCTCTTGGTTG--CT-CTTGG-CAACGACAAGGTTTA 11446
Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384
||| | || || || || |||||| | ||||| || | |||||||| |||||
Sbjct 11447 CAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTT 11506
Query 58385 TTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439
|| ||||| ||| ||| || ||||| |||||| |||| | | | ||||
Sbjct 11507 CTTTGAAAAGCGTGTTGCCGACTACCAAAAGGCCGGCGTTATGAACAGCACCAAG 11561
Score = 95.1 bits (104), Expect = 1e-14
Identities = 197/293 (67%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || || || ||||||| || || | || |||
Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|||||||| ||| ||| ||| | | |||| || ||||| | || ||
Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 10749
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||| | | || || |||||||| ||||| || || || || ||||| |||||||| |
Sbjct 10750 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 10809
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| || || |||||| | ||||| | ||||| ||||| || || | ||
Sbjct 10810 TTCAGCGGCGAGGTTCAAGTGCCTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGATG 10869
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| ||| | || || || | || ||||| ||||| || || ||| | |||||
Sbjct 10870 GAGAACATCCACTCCGAGACTTACTCGCTGCTCATTGACACCTACATCAAGGA 10922
>seq1539
Length=122776
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || || ||||| | || || ||| | ||
Sbjct 50822 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACAATCACGCTGGAGGTCGAATCATCG 50881
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || ||||||||| ||| | || |||||||||
Sbjct 50882 GACACGATCGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 50941
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||| | || ||||| || || ||| ||||||| | ||| || || || |||
Sbjct 50942 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCTGACTACAAC 51001
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || |||||||| || || ||| | ||| | || ||||
Sbjct 51002 ATTCAGAAGGAGTCAACTCTTCACCTTGTCCTTCGTCTGCGTGGAGGTA 51050
Score = 104 bits (114), Expect = 2e-17
Identities = 172/246 (70%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| |||| || || || || || | || ||||| | ||
Sbjct 51050 ATGCAAATCTTCGTCAAGACGTTGACTGGAAAGACAATTACGTTGGAGGTTGAGTCTTCG 51109
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || || || |||||||| ||| | || || || |||
Sbjct 51110 GACACGATTGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGCATCCCCCCTGATCAG 51169
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || || ||||| || || ||||| ||| | || |||||||||| |||
Sbjct 51170 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAGGACGGTCGCACCCTGAGCGATTACAAC 51229
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AG-AAGCGGTG 31430
|| || || || || || ||||| || || || | ||| | |||||| || ||||| ||
Sbjct 51230 ATCCAGAAGGAGTCAACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCAGTAAGCGATG 51289
Query 31431 ACGTCG 31436
| |||
Sbjct 51290 GCTTCG 51295
>seq1045
Length=66817
Score = 105 bits (116), Expect = 6e-18
Identities = 170/244 (70%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| || || || || || |||||| | || || ||
Sbjct 49970 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 49911
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||||| |||| | ||||| | || ||||||||| ||| | || ||||
Sbjct 49910 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 49851
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| || || ||| | || ||| || || ||| |
Sbjct 49850 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 49791
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423
| ||||| || || || || ||||| || ||||| || | ||| | || ||| |||
Sbjct 49790 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGTGGTAAGA 49731
Query 31424 AGCG 31427
||||
Sbjct 49730 AGCG 49727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445757345370000
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