Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq933 136 8e-27 seq501 87.8 4e-12 >seq933 Length=137956 Score = 136 bits (150), Expect = 8e-27 Identities = 301/452 (67%), Gaps = 31/452 (7%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||| ||||| || || || || ||||| |||||||| ||||| ||||| |||||| Sbjct 11100 GTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGG 11159 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | |||| ||||| || | |||||| ||| |||| ||| | ||| Sbjct 11160 CTCAAGAAGCGCGGCCTCATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTCGTGAC 11219 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGT---------TGAAAAAGGGTTTTGTT 102088 || ||||| || |||||| || ||| | |||| | || || | Sbjct 11220 GAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTCCCACCTCAAGAACCG------- 11272 Query 102089 GATACCCCATCAAGAGAAAGGAT-TCTTGAA----ATTGTCACTGAAGCCGTCCGAATTG 102143 ||||| |||| ||| | || | | |||||| || |||||| |||| Sbjct 11273 ----CCCCAGCAAGC---AGGTTATCGAGGACATCATTGTC---GATGCCGTCAAGATTG 11322 Query 102144 AACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGA 102203 | || || || || || | |||| ||| | | || ||||||| ||| ||| Sbjct 11323 AGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGA 11382 Query 102204 TGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGC 102263 ||| ||||||||||| || || || || || ||||||| | || || ||| Sbjct 11383 TGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCTCTTGGCAACGACAAGG 11442 Query 102264 ACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCA 102323 || || | ||||||||||| || ||||| ||||| ||||| | ||||||| Sbjct 11443 TTTACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCA 11502 Query 102324 ACTTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 |||| ||||||||| | || ||||| || ||| Sbjct 11503 ACTTCTTTGAAAAGCGTGTTGCCGACTACCAA 11534 >seq501 Length=177797 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 94408 TCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCAC 94467 || || |||||||| || |||| ||||| || || | | ||||| ||| ||||||||| Sbjct 147534 TCGTACTTCTCGTATAAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCAC 147475 Query 94468 TCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC-ACTCTCTCCATGAAGAGATC 94526 || | ||||||||| || | || | ||| | ||| ||||||| |||||||||||| Sbjct 147474 TCATTGGGGCACATAAGAGTCC-AGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATC 147416 Query 94527 AGATACCCAGATAGCTGGGAAAAGATC 94553 || | ||| | ||| ||||||| || Sbjct 147415 AGGGATCCAAAGAGCAAGGAAAAGGTC 147389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989563396551875