Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq933 95.1 2e-14 >seq933 Length=137956 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||||||||||||| | | || | ||||| || || || || Sbjct 11245 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 11186 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||||| | || ||||| Sbjct 11185 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 11126 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAA 33726 || || || || ||||| ||||||| Sbjct 11125 ATACCCTCGACAGCAGCGAAGGCAA 11101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804806830000