Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq501 131 2e-25
seq933 102 1e-16
>seq501
Length=177797
Score = 131 bits (144), Expect = 2e-25
Identities = 605/950 (64%), Gaps = 30/950 (3%)
Strand=Plus/Minus
Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680
|| ||||| ||||| || || ||||| | || | | || | || || |||||||||
Sbjct 147753 GAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAG 147694
Query 79681 AGGTTA---CTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737
||||| |||| ||||| || | || | || || || || ||| |||
Sbjct 147693 AGGTTGGAGCTACGG---ATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCA 147637
Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797
||||| || || ||||| || | || || || | |||| || | || || | ||||
Sbjct 147636 TCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAG 147577
Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC--TCT-TTCGTATTGTGTATAT 79854
| | | ||||| | || |||| | ||| | ||| |||||| | |||
Sbjct 147576 AGCTTTTGGGCCTTAAG---AGTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTAT 147520
Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914
|| |||||||| || || | ||| | | ||||| || || | || |||||
Sbjct 147519 AAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATA 147460
Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974
| | ||| ||||| | | | ||||| ||||| ||||||||||| |||||||||||
Sbjct 147459 AGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCA 147400
Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034
| || || || | || | ||| || || || ||||| ||||| | ||
Sbjct 147399 AGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAG 147340
Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094
| | | ||| | ||||| || || | || ||||| | | | || || || |||||
Sbjct 147339 TCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTG 147280
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
|| ||||| || | ||| | ||| ||||||||| | || | | ||| |||| |||||
Sbjct 147279 CCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCG 147220
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 80212
||||| || |||||||| |||| || || || | || || || | |||
Sbjct 147219 TTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTG 147160
Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272
||||| || || || ||||| || ||||| | |||||| || | || || || |
Sbjct 147159 --AGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAA 147102
Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332
| ||||| || || || |||||| | || || || ||||| || |
Sbjct 147101 TACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGG 147042
Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392
|| || || || || | |||||||| ||||| || || | || |||| || |
Sbjct 147041 GGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGT 146982
Query 80393 TGTACGTCTCAAT----AGCTGA---TTCTATATCCCATTGATGAATTCCTACCGCGACA 80445
|||| ||||| || ||| | || | | |||| |||| || || ||||||
Sbjct 146981 TGTAGGTCTCGATGACGCGCTCAACGTTGT-CACCCCA--GATG----CCAACAGCGACA 146929
Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505
||||| | ||||||||| ||||| || | |||||| | | |||| | ||| |||
Sbjct 146928 CGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGAT 146869
Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555
| ||||| || || || || || || | ||| ||||| || |||||
Sbjct 146868 CTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTA 146819
>seq933
Length=137956
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| ||| ||||||||||||||| | | || || |||||||| || || ||
Sbjct 11245 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 11186
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|||||||| ||||| ||||| || ||||| || ||||| || || | ||| |||||
Sbjct 11185 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 11126
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAAC 50105
|| || || || || || ||||||||
Sbjct 11125 ATACCCTCGACAGCAGCGAAGGCAAC 11100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718254210165000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |