Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq501 131 2e-25 seq933 102 1e-16 >seq501 Length=177797 Score = 131 bits (144), Expect = 2e-25 Identities = 605/950 (64%), Gaps = 30/950 (3%) Strand=Plus/Minus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || ||||| ||||| || || ||||| | || | | || | || || ||||||||| Sbjct 147753 GAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAG 147694 Query 79681 AGGTTA---CTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 ||||| |||| ||||| || | || | || || || || ||| ||| Sbjct 147693 AGGTTGGAGCTACGG---ATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCA 147637 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 ||||| || || ||||| || | || || || | |||| || | || || | |||| Sbjct 147636 TCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAG 147577 Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC--TCT-TTCGTATTGTGTATAT 79854 | | | ||||| | || |||| | ||| | ||| |||||| | ||| Sbjct 147576 AGCTTTTGGGCCTTAAG---AGTCTTGCGACCCTTGCCCATCTGTTCGTACTTCTCGTAT 147520 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 || |||||||| || || | ||| | | ||||| || || | || ||||| Sbjct 147519 AAGGCCTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATA 147460 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | | ||| ||||| | | | ||||| ||||| ||||||||||| ||||||||||| Sbjct 147459 AGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCA 147400 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 | || || || | || | ||| || || || ||||| ||||| | || Sbjct 147399 AGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAG 147340 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | ||| | ||||| || || | || ||||| | | | || || || ||||| Sbjct 147339 TCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTG 147280 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || ||||| || | ||| | ||| ||||||||| | || | | ||| |||| ||||| Sbjct 147279 CCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCG 147220 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 80212 ||||| || |||||||| |||| || || || | || || || | ||| Sbjct 147219 TTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTG 147160 Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 ||||| || || || ||||| || ||||| | |||||| || | || || || | Sbjct 147159 --AGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAAA 147102 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 | ||||| || || || |||||| | || || || ||||| || | Sbjct 147101 TACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGGG 147042 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || || || || | |||||||| ||||| || || | || |||| || | Sbjct 147041 GGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATCAGGT 146982 Query 80393 TGTACGTCTCAAT----AGCTGA---TTCTATATCCCATTGATGAATTCCTACCGCGACA 80445 |||| ||||| || ||| | || | | |||| |||| || || |||||| Sbjct 146981 TGTAGGTCTCGATGACGCGCTCAACGTTGT-CACCCCA--GATG----CCAACAGCGACA 146929 Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505 ||||| | ||||||||| ||||| || | |||||| | | |||| | ||| ||| Sbjct 146928 CGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGAT 146869 Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 | ||||| || || || || || || | ||| ||||| || ||||| Sbjct 146868 CTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTA 146819 >seq933 Length=137956 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||||||||||||| | | || || |||||||| || || || Sbjct 11245 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 11186 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||| ||||| || ||||| || ||||| || || | ||| ||||| Sbjct 11185 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 11126 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAAC 50105 || || || || || || |||||||| Sbjct 11125 ATACCCTCGACAGCAGCGAAGGCAAC 11100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254210165000