Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq501 143 4e-29
seq933 86.0 8e-12
>seq501
Length=177797
Score = 143 bits (158), Expect = 4e-29
Identities = 616/961 (64%), Gaps = 32/961 (3%)
Strand=Plus/Minus
Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753
|||||||| || ||||| ||||| || || ||||| | || ||| || | || ||
Sbjct 147763 CAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGAT 147704
Query 71754 TTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810
|||||||| || || |||| |||||| || | || | || || || ||
Sbjct 147703 CTCAGTGCAGAGGTTGGAGCTACG---GATGGTACCCAGGTTCTTCTGGTTGCTTTTGCG 147647
Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870
||| |||||||| || || || || || | || || || | |||| || | ||
Sbjct 147646 GTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGAT 147587
Query 71871 CGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCT-TTCGTA 71927
|| | ||||| | | ||||| | | ||||| | ||| | ||| ||||||
Sbjct 147586 GGCATACCAGAGCTTTTGGGCCTTAAG---AGTCTTGCGACCCTTGCCCATCTGTTCGTA 147530
Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCAT 71986
| ||||| |||||||| || || | ||| | | | | ||||| || ||||
Sbjct 147529 CTTCTCGTATAAGGCCTCGAACTCCTCACCGTA-GCAGTCGGCAAGACCAGGGCACTCAT 147471
Query 71987 TCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046
| || ||||| | | ||| ||||| | | | ||||| ||||| ||||||||||| |
Sbjct 147470 TGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGA 147411
Query 72047 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106
|||||||||| | || || || | || | ||| || || || ||||| |
Sbjct 147410 TCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCA 147351
Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166
|||| | || | | | ||| | ||||| || || | || ||||| | | | || |
Sbjct 147350 GATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGG 147291
Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226
| || ||||| || ||||| || | ||| | ||| ||||||||| | || | | ||| |
Sbjct 147290 GACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGG 147231
Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT-- 72284
||| ||||| ||||| | |||||||| |||| || || || | || || ||
Sbjct 147230 GAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGC 147171
Query 72285 ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 72344
|| ||| ||||| || || || ||||| || ||||| | |||||| || |
Sbjct 147170 GGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAG 147113
Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404
|| || || || ||||| ||| || || |||||| | || || || |||||
Sbjct 147112 GGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAG 147053
Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464
|| | || || || || || | |||||||| ||||| || || | ||
Sbjct 147052 CTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCT 146993
Query 72465 AGACAGTAGATTGTACGTCTCAAT----AGCTGA---TTCTATATCCCATTGATGTATTC 72517
|||| || ||||| ||||| || ||| | || | | |||| |||| |
Sbjct 146992 CGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGT-CACCCCA--GATG----C 146940
Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577
| || ||||||||||| | ||| ||||| ||||| || | |||||| | | ||||
Sbjct 146939 CAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCA 146880
Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637
| ||| ||| | ||||| || || || || || || | ||| ||||| || ||||
Sbjct 146879 GGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGT 146820
Query 72638 A 72638
|
Sbjct 146819 A 146819
>seq933
Length=137956
Score = 86.0 bits (94), Expect = 8e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| ||||| ||| |||||||||||| || | | || | |||||||| || || ||
Sbjct 11245 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 11186
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|||||||| ||||| ||||| || ||||| || || || || || | ||| |||||
Sbjct 11185 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 11126
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209
|| || || || || || |||||||
Sbjct 11125 ATACCCTCGACAGCAGCGAAGGCAA 11101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671125567485000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |