Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq501 143 4e-29 seq933 86.0 8e-12 >seq501 Length=177797 Score = 143 bits (158), Expect = 4e-29 Identities = 616/961 (64%), Gaps = 32/961 (3%) Strand=Plus/Minus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 |||||||| || ||||| ||||| || || ||||| | || ||| || | || || Sbjct 147763 CAAGGCAAGCGAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGAT 147704 Query 71754 TTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 |||||||| || || |||| |||||| || | || | || || || || Sbjct 147703 CTCAGTGCAGAGGTTGGAGCTACG---GATGGTACCCAGGTTCTTCTGGTTGCTTTTGCG 147647 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 ||| |||||||| || || || || || | || || || | |||| || | || Sbjct 147646 GTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGAT 147587 Query 71871 CGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCT-TTCGTA 71927 || | ||||| | | ||||| | | ||||| | ||| | ||| |||||| Sbjct 147586 GGCATACCAGAGCTTTTGGGCCTTAAG---AGTCTTGCGACCCTTGCCCATCTGTTCGTA 147530 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCAT 71986 | ||||| |||||||| || || | ||| | | | | ||||| || |||| Sbjct 147529 CTTCTCGTATAAGGCCTCGAACTCCTCACCGTA-GCAGTCGGCAAGACCAGGGCACTCAT 147471 Query 71987 TCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046 | || ||||| | | ||| ||||| | | | ||||| ||||| ||||||||||| | Sbjct 147470 TGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGA 147411 Query 72047 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 |||||||||| | || || || | || | ||| || || || ||||| | Sbjct 147410 TCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCA 147351 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 |||| | || | | | ||| | ||||| || || | || ||||| | | | || | Sbjct 147350 GATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGG 147291 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | || ||||| || ||||| || | ||| | ||| ||||||||| | || | | ||| | Sbjct 147290 GACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTAAAGACACGGAGCATGG 147231 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT-- 72284 ||| ||||| ||||| | |||||||| |||| || || || | || || || Sbjct 147230 GAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGCGCGGATGC 147171 Query 72285 ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 72344 || ||| ||||| || || || ||||| || ||||| | |||||| || | Sbjct 147170 GGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAG 147113 Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404 || || || || ||||| ||| || || |||||| | || || || ||||| Sbjct 147112 GGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAG 147053 Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 || | || || || || || | |||||||| ||||| || || | || Sbjct 147052 CTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCT 146993 Query 72465 AGACAGTAGATTGTACGTCTCAAT----AGCTGA---TTCTATATCCCATTGATGTATTC 72517 |||| || ||||| ||||| || ||| | || | | |||| |||| | Sbjct 146992 CGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGT-CACCCCA--GATG----C 146940 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | || ||||||||||| | ||| ||||| ||||| || | |||||| | | |||| Sbjct 146939 CAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTCA 146880 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 | ||| ||| | ||||| || || || || || || | ||| ||||| || |||| Sbjct 146879 GGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGT 146820 Query 72638 A 72638 | Sbjct 146819 A 146819 >seq933 Length=137956 Score = 86.0 bits (94), Expect = 8e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||||||||||| || | | || | |||||||| || || || Sbjct 11245 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 11186 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||| ||||| || ||||| || || || || || | ||| ||||| Sbjct 11185 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 11126 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209 || || || || || || ||||||| Sbjct 11125 ATACCCTCGACAGCAGCGAAGGCAA 11101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125567485000