Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq501 149 9e-31 seq933 129 9e-25 >seq501 Length=177797 Score = 149 bits (164), Expect = 9e-31 Identities = 313/463 (68%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| |||| | || ||||||||||| || Sbjct 147272 CAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATCTATCTCGAGCCTTGGCACGCCGAT 147331 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || |||||| | || |||| || ||| |||| ||||||| || ||| | ||| Sbjct 147332 GTCTTCGACTTTTTAGATCTGCGGAAGAACCATGGCAAGGAAGAGGTCCGCGCCCGTGAC 147391 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | || ||| || ||| | || ||| | ||||||||| | || || |||| | Sbjct 147392 CTTTTCCTTGCTCTTTGGATCCCTGATCTCTTCATGAAGAGAGTAGAAAAGAACGGAG-- 147449 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| | || || ||||| |||| |||| || || ||| Sbjct 147450 -ACTGGACTCTTATGTGCCCCAATGAGTGCCCTGGTCTTGCCGACTGCTACGGTGAGGAG 147508 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || |||||| ||| | ||||| || |||| | || |||| | | || Sbjct 147509 TTCGAGGCCTTATACGAGAAGTACGAACAGATGGGCAAGGGTCGCAAGAC-TCTTAAGGC 147567 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | | || ||| | |||||| | |||||| ||||| || | || | ||| || Sbjct 147568 CCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACAGGCAACCCCTTCATGCT 147627 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||||| | | || ||||| |||||||| || |||| |||||| |||| Sbjct 147628 CTACAAGGATGCTGCCAACCGCAAAAGCAACCAGAAGAACCTGGGTACCATCCGTAGCTC 147687 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||| || ||||| || || | |||||| || | || |||||| Sbjct 147688 CAACCTCTGCACTGAGATCATTGAGTACTCCGCGCCTGACGAG 147730 >seq933 Length=137956 Score = 129 bits (142), Expect = 9e-25 Identities = 312/465 (67%), Gaps = 27/465 (6%) Strand=Plus/Plus Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 || || ||||| || | ||| | | |||| || ||||| || || ||||| || ||| Sbjct 11070 GATGAGAAGTCCTCCTTCGCTCAGCGTTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTC 11129 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || ||| || || ||||||| ||||||||||||||||| ||||||||||| ||| Sbjct 11130 TTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTG 11189 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || | |||||| | || ||||| |||||||| || ||| ||||| ||| || Sbjct 11190 ACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTC 11249 Query 125580 CTGT-TTCGCAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAAAGGTCATCAA 125635 |||| || || || | || ||| | |||| | | ||| || || Sbjct 11250 CTGTACTCCCACCTCAAGAACCGCCCCAGCAAGCAGGT-TATCGAGGA---------CAT 11299 Query 125636 CATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAG 125695 |||||| ||||||||| | ||| || || ||||| || || || |||| || | Sbjct 11300 CATTGT---CGATGCCGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCCCTTCCTTGCGC 11356 Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 | || |||||||||||| ||| || ||| ||||||| ||||| || || || || || Sbjct 11357 CCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCT 11416 Query 125756 ACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTC 125810 || |||| ||||| || |||| ||||||| | || ||||| || || Sbjct 11417 CTTG-----GTTGCTCTTGGCAACGACAAGGTTTACAAGTCTTCCAACCCCTTCGACTTT 11471 Query 125811 ATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| | || || || | || ||||||||||| || || ||| Sbjct 11472 ATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTCTTTGAAAAG 11516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044147235000