Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 114 3e-20
seq1045 104 5e-17
>seq1539
Length=122776
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || |||||||| || |||||||| | ||| | ||| ||
Sbjct 51034 AAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGACAAAGTGCGACCATC 50975
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || ||||| || ||||| | | ||| || || ||||| || || || || ||
Sbjct 50974 TTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 50915
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || || || || | || || | ||| ||||| || || || ||
Sbjct 50914 CTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACCTCCAGCGTGATTGT 50855
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| ||||| | ||| || || || ||||||||
Sbjct 50854 CTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822
Score = 109 bits (120), Expect = 1e-18
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || || || || ||||| || ||||| | || || || || || || |||
Sbjct 50790 GTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 50731
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | || ||||||||||| || ||||| || ||||||||||| | ||
Sbjct 50730 GCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGAATCTTAGACTTG 50671
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| | || ||||| || || || ||||| |||||||| ||
Sbjct 50670 ACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTAAGGGTC 50611
Query 104543 TTTAC 104547
|| ||
Sbjct 50610 TTGAC 50606
Score = 95.1 bits (104), Expect = 3e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||||||||| ||||| || || || | |||||| || || || || |||
Sbjct 50511 GTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTGCCA 50452
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || ||||| || || || || ||||||||||| | ||
Sbjct 50451 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTC 50392
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||||| | || ||||| || || || ||||| || || | ||||
Sbjct 50391 ACGTTGTCGATAGTATCAGAGGACTCGACCTCCAGAGTGATGGTCTTGCCGGTGACTGTT 50332
Score = 95.1 bits (104), Expect = 3e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || | |||||| || | ||| ||||||
Sbjct 51246 GTTGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAATTGCTTTCCA 51187
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || | ||| |||||||| || || || || || || || ||||| | ||
Sbjct 51186 GCAAAAATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCTTGGATCTTCGACTTA 51127
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || || || ||||| | ||||| ||||| ||||| | ||
Sbjct 51126 ACATTGTCAATCGTGTCCGAAGACTCAACCTCCAACGTAATTGTCTTTCCAGTCAACGTC 51067
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 51066 TTGACGAAGATTTGCAT 51050
>seq1045
Length=66817
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || | ||||| || || || |||||
Sbjct 49769 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 49828
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || || || || || || ||||| ||||| | ||
Sbjct 49829 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 49888
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| || || ||||||||||| || || ||
Sbjct 49889 ACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 49948
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 49949 TTCACGAAGATCTGCAT 49965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151374427525500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |