Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq277 118 9e-22 >seq277 Length=45443 Score = 118 bits (130), Expect = 9e-22 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||| ||||| ||||| ||||| | | | || || || || ||||| Sbjct 3587 ACGCCCGTGCTGCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCG 3528 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | | |||||| | || |||||| || ||||| || | ||||||||| Sbjct 3527 ACGATCTCGGGGGT-GAAGATGCGCTCCACGACGAGCTGGGCGACGCGGTCGCCCTCAGC 3469 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 |||||||| ||| ||| | || |||||| || | || || | |||||||||||| Sbjct 3468 GACCTCGAAGTCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTC 3409 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 |||||| || ||||| |||||| ||||||||||| |||| | || ||||||||||| || Sbjct 3408 GGCGTCGATGACGCCAGCGCCCGTGTCGATGAAGTTCTTGGCAGCGAGGCCGGAGCGCGG 3349 Query 5740 AGCCACGCGGCCGT 5753 || | |||||||| Sbjct 3348 GGCGATGCGGCCGT 3335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430045882907000