Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1539 109 5e-19 seq1045 93.3 4e-14 >seq1539 Length=122776 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || ||||||||||| | ||| || || | |||| | |||||| Sbjct 50803 CACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTC 50744 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| || | ||||||||| ||||| || ||||| ||||| | Sbjct 50743 AAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGGATGCCTTCCTTGTCCTG 50684 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | |||||| | ||| || |||| | || || || | |||||||| || Sbjct 50683 AATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACCTCGAGAGTGATGGTCTT 50624 Query 94978 TCCAGTAAGAGTTTTCAC 94995 |||||||| || || || Sbjct 50623 GCCAGTAAGGGTCTTGAC 50606 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || || | || | ||| | ||| || ||||| || | ||| | Sbjct 51056 TTTGCATACCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGT 50997 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || |||| ||| |||||||| |||||| | || || || | ||||| | Sbjct 50996 AGTCAGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGT 50937 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||| || || ||||| | ||| || | ||| ||| | ||| ||||| | Sbjct 50936 CGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATG 50877 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||| || |||||||| | || || || ||||||||||| Sbjct 50876 ATTCGACCTCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822 >seq1045 Length=66817 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | ||| || ||||| || | ||| || ||| || ||| | Sbjct 49751 CGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 49810 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| | ||||| | | ||||| || || || || || || ||| Sbjct 49811 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 49870 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | || || |||| ||||| Sbjct 49871 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 49930 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || ||||| |||||||||||| || Sbjct 49931 GTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGATT 49969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448282094085000