Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq501 403 5e-107 >seq501 Length=177797 Score = 403 bits (446), Expect = 5e-107 Identities = 1072/1622 (66%), Gaps = 18/1622 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | ||||| |||||||| Sbjct 147002 TTCACTCACGCCTCTCCTACACTCTTCAACGCTGGTACCCCCCAAGCACAGCTGTCTTCT 147061 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| ||| | | ||||| || || || ||||||||||| | ||||| || |||| Sbjct 147062 TGCTTCCTTGTCGACATGAAAGAGGACTCTATCGAGGGTATTTACGACACCCTCAAGACC 147121 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || || | || ||||||| || || || |||||| | | || ||||| | || || Sbjct 147122 TGCGCAATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACG-TCCACCGCATCCGCGC 147180 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||||| |||||| || ||| || || | ||||||||||| | Sbjct 147181 TACCGG-CTCTTACATTGCCGGCACCAATGGCACCTCCAACGGTATCGTTCCCATGCTCC 147239 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| ||| | || ||||| ||||||||||||||||||| ||||| || || | Sbjct 147240 GTGTCTTTAATAACACTGCTCGGTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCTT 147299 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || |||||||||||| || |||||| | || || ||| | || || ||||| | Sbjct 147300 TTGCCATCTATCTCGAGCCTTGGCACGCCGATGTCTTCGACTTTTTAGATCTGCGGAAGA 147359 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || || || | || || ||||| || ||| ||| |||||| | |||| | Sbjct 147360 ACCATGGCAAGGAAGAGGTCCGCGCCCGTGACCTTTTCCTTGCTCTTTGGATCCCTGATC 147419 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||| | || || || || | ||| | || | ||||| | || || Sbjct 147420 TCTTCATGAAGAGAGTAGA-AAAGAACGGAGACTGGACTCTTATGTGCCCCAATGAGTGC 147478 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || |||||| |||| | ||||| || | | || ||||||| ||||| ||| | Sbjct 147479 CCTGGTCTTGCCGACTGCTACGGTGAGGAGTTCGAGGCCTTATACGAGAAGTACGAACAG 147538 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 ||| |||| ||| ||||| || || || ||||| |||| ||||||| | || | Sbjct 147539 ATGGGCAAGGGTCGCAAGACTCTTAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCT 147598 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || | |||||||| | |||| ||| | ||||| ||| | ||||||||| |||| Sbjct 147599 CAAACCGAGACAGGCAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAAAGCAAC 147658 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACAC 364262 ||| || |||| ||||| | || | || |||||| || || ||||| ||||| ||| | Sbjct 147659 CAGAAGAACCTGGGTACCA-TCCGTAGCTCCAACCTCTGCACTGAGATCATTGAGTACTC 147717 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--- 364319 ||| || |||||| || || |||||||| || ||| | || | || | || || Sbjct 147718 CGCGCCTGACGAGGTCGCTGTGTGTAACCTGGCCTCGCTTGCCTTGCCCACATTCGTTGA 147777 Query 364320 ---AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376 || || ||| | ||| |||| | || | || || ||| | || | | Sbjct 147778 CTACAACGAGGGTGTCTACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTCGTTCG 147837 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAA 364436 ||| ||| ||| | || || || | || || | | || ||| || Sbjct 147838 CAACCTCAACAGAATCATTGATGTCAACCACTACCCGGTCCAGGAGGCCCGCAACAGCAA 147897 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 ||||| || ||||| |||||||| ||||| ||||| || || || | || || || Sbjct 147898 CATGCGCCACCGCCCCATTGGTCTCGGTGTGCAGGGTCTTGCGGATGCCTTCTTGGCTCT 147957 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 | ||| | || || || ||||| ||||||| || || ||| |||| || || ||||| Sbjct 147958 CCGCATGCCCTTCGAGTCTCCTGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAAT 148017 Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTA 364615 || ||| || | ||| ||| ||| | ||||| || |||| ||| | Sbjct 148018 CTACCATGCTGCCCTTACTATGTCG-GTGCAGTTGGCTAAGGAGGAGGGTCCCTACCAGA 148076 Query 364616 CTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC 364675 | || ||||| |||||| |||| ||||| | |||||| || | |||||||| | || Sbjct 148077 CGTACGAGGGTTCCCCTGTTTCTCAGGGCATTCTCCAGTACGACATGTGGAATGTTAAGC 148136 Query 364676 CATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 | || | | ||| ||||||| | || | | | | | ||| |||| ||| ||| Sbjct 148137 CCTCGGATCTCTGGGACTGGGACGCTCTGAAGGAGC-AGATCAAGCAGCACGGTGTCCGC 148195 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 ||||| || | ||||||||||| || || || | |||||| | || ||||| Sbjct 148196 AACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAAT 148255 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 ||||||||||| || | || ||| |||| ||| || || ||| | || || ||| Sbjct 148256 GAGTGCTTCGAGCCCTACACCTCCAACATTTACCAACGTCGTGTCCTTGCTGGCGAGTTT 148315 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | || || || | || | ||||| || |||| || |||||| || Sbjct 148316 CAAGTCGTCAACCCTTGGCTCTTGAAGGACCTCGTCGACATGGGTCTGTGGTCCGATGCT 148375 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 ||||||||| |||||| |||| || |||||| | |||||||| || |||| Sbjct 148376 ATGAAGAACCGTATCATTGCCGAGAACGGTTCTATCCAGAACATCCCCAACATTCCTACC 148435 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034 || ||||| | | ||||| || || |||||||| ||| ||| || | | | ||| Sbjct 148436 GAGGTGAAGGCATTGTACAAGACTGTTTGGGAAATCTCCCAGCGTACCGTTGTACAGATG 148495 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094 || ||||| || ||||| || ||| ||| ||||| ||||| | ||||| | Sbjct 148496 GCTGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCCCTTAACATCCACATGAAGGAC 148555 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154 || || | |||| | || |||||| ||| || ||||| |||||| ||||| Sbjct 148556 CCGACTATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTGAAGACG 148615 Query 365155 GG 365156 || Sbjct 148616 GG 148617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303326463770750