Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 seq933 98.7 7e-16 seq1052 82.4 5e-11 >seq2 Length=1292 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 291 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 232 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 231 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 197 >seq933 Length=137956 Score = 98.7 bits (108), Expect = 7e-16 Identities = 198/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| |||||||| ||| | || ||||| ||||||| ||||| || Sbjct 111632 GGACGCCTTCTATCGCTACAAGATGGAGAAGATTGTTACCAAGATCGAGGGCAAGGGCAA 111691 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || ||||| | |||||| || |||||| || | |||| || || | Sbjct 111692 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGTGTCGCTCAGTCCCTCGCTCGTCCCGG 111751 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||| | || || ||||| | || || || || ||||| | | || | | Sbjct 111752 TGCCTATGTCATCAAGTACTTCGGCTTTGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 111811 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| ||||||| || || || | ||||||||||||||| || || Sbjct 111812 CGACGACCGCTGGATCATTAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 111871 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || |||||| || || || | ||| | ||||| |||||||| Sbjct 111872 TGGCTTCATCAACAAGTTCGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 111925 >seq1052 Length=82584 Score = 82.4 bits (90), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 6/92 (7%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCG-T 25956 |||||||| ||| | |||| |||||||||||||||||||| | || ||||||| | Sbjct 47480 AGCCCGTTTCCTCAGTTGTGCTTTCGCTAGATAGTAGATAGAGACCGTGGGAATCTCGTT 47539 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | || | |||||||||||| ||||||| |||| Sbjct 47540 TGATGCATTCATGCGCGTCGCTAATTAAATGA 47571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940566475375