Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 3e-27
seq933 98.7 7e-16
seq1052 82.4 5e-11
>seq2
Length=1292
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 291 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 232
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 231 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 197
>seq933
Length=137956
Score = 98.7 bits (108), Expect = 7e-16
Identities = 198/294 (67%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253
|||||| ||||| |||||||| ||| | || ||||| ||||||| ||||| ||
Sbjct 111632 GGACGCCTTCTATCGCTACAAGATGGAGAAGATTGTTACCAAGATCGAGGGCAAGGGCAA 111691
Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313
||| || || ||||| | |||||| || |||||| || | |||| || || |
Sbjct 111692 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGTGTCGCTCAGTCCCTCGCTCGTCCCGG 111751
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|||| | || || ||||| | || || || || ||||| | | || | |
Sbjct 111752 TGCCTATGTCATCAAGTACTTCGGCTTTGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 111811
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| ||||||| || || || | ||||||||||||||| || ||
Sbjct 111812 CGACGACCGCTGGATCATTAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 111871
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||| || |||||| || || || | ||| | ||||| ||||||||
Sbjct 111872 TGGCTTCATCAACAAGTTCGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 111925
>seq1052
Length=82584
Score = 82.4 bits (90), Expect = 5e-11
Identities = 74/92 (80%), Gaps = 6/92 (7%)
Strand=Plus/Plus
Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCG-T 25956
|||||||| ||| | |||| |||||||||||||||||||| | || ||||||| |
Sbjct 47480 AGCCCGTTTCCTCAGTTGTGCTTTCGCTAGATAGTAGATAGAGACCGTGGGAATCTCGTT 47539
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
| || | |||||||||||| ||||||| ||||
Sbjct 47540 TGATGCATTCATGCGCGTCGCTAATTAAATGA 47571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334940566475375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |