Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq501 134 2e-26 seq933 95.1 2e-14 >seq501 Length=177797 Score = 134 bits (148), Expect = 2e-26 Identities = 438/676 (65%), Gaps = 16/676 (2%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || ||||| || |||| || ||||| | | ||| ||||||| | | |||| ||| Sbjct 147486 AGACCAGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTTTTCTACTCTCTTC 147427 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || ||||||||||| ||||||||||| | || || || | || | || || || Sbjct 147426 ATGAAGAGATCAGGGATCCAAAGAGCAAGGAAAAGGTCACGGGCGCGGACCTCTTCCTTG 147367 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| ||||| | || | | | ||| | ||||| || || | || Sbjct 147366 CCATGGTTCTTCCGCAGATCTAAAAAGTCGAAGACATCGGCGTGCCAAGGCTCGAGATAG 147307 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | | || || || ||||| || ||||| || | ||| | ||| ||||||||| Sbjct 147306 ATGGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTACCGAGCAGTGTTATTA 147247 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| |||| ||||| ||||| || |||||||| || | || || Sbjct 147246 AAGACACGGAGCATGGGAACGATACCGTTGGAGGTGCCATTGGTGCCGGCAATGTAAGAG 147187 Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || | || || || | ||| ||||| || || || ||||| || ||||| | Sbjct 147186 CCGGTAGCGCGGATGCGGTGGACGTTG--AGACCAATGCCACCAGCCATCTTGGAGATCA 147129 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 |||||| || | || || || || ||||| ||| || || |||||| | | Sbjct 147128 TTGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCGATAGAGTCCTCTTTCATGTCGACAA 147069 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | || || ||||| || | || || || || || | |||||||| |||| Sbjct 147068 GGAAGCAAGAAGACAGCTGTGCTTGGGGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGT 147009 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATAT 63551 |||| || | || || | || ||||| ||||| || ||| | || | Sbjct 147008 GAGTGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCAC 146949 Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 |||| |||| || || ||||||||||| | ||||||||| ||||| || | |||| Sbjct 146948 CCCA--GATG----CCAACAGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCT 146895 Query 63612 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63671 || || | |||| | ||| ||| | ||||| || || || || || || | ||| Sbjct 146894 TGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGT 146835 Query 63672 AAAAGTCTCGTTCGTA 63687 ||||| || ||||| Sbjct 146834 TGAAGTCGCGGTCGTA 146819 >seq933 Length=137956 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||| ||||||||||| | | || | |||||||| || || || Sbjct 11245 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGA 11186 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| ||||| ||||| || ||||| || ||||| || || | ||| |||||| Sbjct 11185 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAA 11126 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAA 32805 || || || || || || ||||||| Sbjct 11125 ATACCCTCGACAGCAGCGAAGGCAA 11101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619129350000