Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1539 95.1 1e-14 seq1045 87.8 2e-12 >seq1539 Length=122776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CA 25081 ||||| || ||||||| | || || ||||| ||||| |||||||| ||||| | Sbjct 50339 ACCGGCAAGACCATCACTCTGGAGGTCGAGTCCTCTGATACTATCGACAACGTGAAGTCC 50398 Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 || | ||| ||||| || || || || || ||||| ||||| |||| || || ||||| Sbjct 50399 AAGATTCAG-GACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCTGGCAA 50457 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || | || || | |||||| | ||| ||||||||||| || || ||||| || || Sbjct 50458 GCAGCTTGAGGACGGTCGCACCCTCTCCGACTACAATATTCAGAAGGAGTCCACCCTTCA 50517 Query 25202 TTTAGTGCT 25210 || ||||| Sbjct 50518 CTTGGTGCT 50526 >seq1045 Length=66817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || ||||| | ||||| | || ||||||||||| Sbjct 49965 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCGTCC 49906 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || || || |||| Sbjct 49905 GACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACC 49848 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || ||||| || || | || || | ||||| || ||| |||| Sbjct 49847 AGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACA 49788 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || ||||| || || | ||||| Sbjct 49787 ACATCCAGAAGGAGTCCACTCTCCACCTGGTGCT 49754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319418074375