Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq933 82.4 9e-11 >seq933 Length=137956 Score = 82.4 bits (90), Expect = 9e-11 Identities = 163/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| | ||| || |||||||| || | ||| ||||| || || || | ||| ||| Sbjct 11255 GTACAGGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 11196 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 |||||| | ||| || | || || || ||||||||||| || || || || || ||| Sbjct 11195 GAATGTCAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACC 11136 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 | || || ||||| || || || || || || || | ||| | || || | ||| Sbjct 11135 ACTGAAGAAAATACCCTCGACAGCAGCGAAGGCAACCAAACGCTGAGCGAA---GGAGGA 11079 Query 93262 ATT---ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | ||| ||||| || | ||||| ||||| || || ||| ||||| | ||| Sbjct 11078 CTTCTCATCGCTAATCCACTTGAGGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAACTGT 11019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849488765000