Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq933 138 2e-27
seq826 118 2e-21
seq1038 107 4e-18
seq501 98.7 2e-15
seq970 87.8 4e-12
>seq933
Length=137956
Score = 138 bits (152), Expect = 2e-27
Identities = 287/425 (68%), Gaps = 8/425 (2%)
Strand=Plus/Minus
Query 251541 TTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTC 251600
||| || || | ||||| ||| ||||| || | |||||| |||| ||||| |||
Sbjct 11534 TTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTC 11475
Query 251601 CATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGAT 251660
||| |||||||||||||| | | ||||| |||| | |||||| || || ||||
Sbjct 11474 CATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACCAAGAG 11415
Query 251661 GCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACG 251720
|||||| || || ||||| | ||||| |||||| | ||||||||||||| ||
Sbjct 11414 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGC 11355
Query 251721 ACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGC 251780
||||||| ||||| | ||| |||| || | || || || | | || |
Sbjct 11354 GCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTC 11295
Query 251781 CT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAA 251836
|| | ||||| | | | | | ||||| || | ||||||||||| | | |
Sbjct 11294 CTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGTGGGAGTACAGGAGGCAGGCGA 11239
Query 251837 ACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCA 251896
| | ||||||||||||||| ||| ||||| ||||||||| | ||| || ||||
Sbjct 11238 AGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCA 11179
Query 251897 TCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCT 251956
| | || || ||| ||||||||||||| | | |||| ||| ||| | | |||||
Sbjct 11178 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCT 11119
Query 251957 CGACA 251961
|||||
Sbjct 11118 CGACA 11114
>seq826
Length=182683
Score = 118 bits (130), Expect = 2e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || || | ||||||||| ||||| ||||| || ||||||||||| ||||| |||||
Sbjct 56939 CTCCCGTATCGCTGTCATTGGCCCCAACGGTGCCGGCAAGTCTACCCTCATCAACGTCCT 56998
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
||||| ||| | | || ||||| | | |||| ||||| || || ||
Sbjct 56999 CACTGGTGAGCTCGTCCCTACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 57058
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||||||| ||||||||| ||||||||||||| ||| || |
Sbjct 57059 CTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCTGA 57118
Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||||| |||||||| | | || | ||| |||||| ||| || |||| ||
Sbjct 57119 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 57169
Score = 100 bits (110), Expect = 6e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| ||||| ||||| || |||| ||||| ||||| |||
Sbjct 56124 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTCAAC 56183
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 56184 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 56243
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 56244 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 56302
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 56303 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 56344
Score = 96.9 bits (106), Expect = 7e-15
Identities = 95/120 (79%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||| ||||| |||||||| ||||| |||||| ||||| | ||| | | || ||
Sbjct 57528 CACTCCCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCTGCCTGC 57587
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||| ||||| | ||||||| ||||||| || ||||||||||||||||| || ||||| ||
Sbjct 57588 TCT-TGGCAGCGCCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTCGACCGTGA 57646
>seq1038
Length=43149
Score = 107 bits (118), Expect = 4e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || |||||||| ||||| |||||||||||| ||||| | | || ||||| || |
Sbjct 23075 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCCTTGGCCCGTGCCATGCTCAAG 23134
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||| |||||||||||||| || || || |||||| ||||| ||||| | |||
Sbjct 23135 GGCGCCGACGTCCTACTGCTTGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCC 23194
Query 279816 TGGCTAGTGTCCTACCT 279832
||||| | | |||||||
Sbjct 23195 TGGCTCGAGACCTACCT 23211
>seq501
Length=177797
Score = 98.7 bits (108), Expect = 2e-15
Identities = 448/698 (64%), Gaps = 13/698 (2%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| |||| ||||||||||| || ||||| | | | || || | ||
Sbjct 148531 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGA 148472
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
||| ||||| |||||||||| |||||| || || | | ||||| | |||||
Sbjct 148471 GATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATGTTCTG 148412
Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293
|||||| || | |||||| || |||||||||| | |||||||| || |||| |
Sbjct 148411 GATAGAACCGTTCTCGGCAATGATACGGTTCTTCATAGCATCGGACCACAGACCCATG-T 148353
Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353
| | ||| || | || ||| |||||| || | ||||| ||||| || ||||
Sbjct 148352 CGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGAC 148293
Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413
| ||||||||| || ||| ||| ||| |||| || | ||||||| |
Sbjct 148292 GTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGG 148233
Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCG-TCAGAGAGTTCCTCACACC---CTTCTTGACA 293469
| || || ||||| | || | || ||||||||| | ||||| || |||||
Sbjct 148232 TGCTGGCAGTCGGCATGGGCGC-GACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATC 148174
Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527
|| | ||| | |||||| |||||| || || || ||||| ||| | | |
Sbjct 148173 TGCTCCTTCAGAGCGTCCCAGTCCCAGAG--ATCCGAGGGCTTAACATTCCACATGTCGT 148116
Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587
|||| | || |||| |||| || ||||| | || | | ||| || | ||| |
Sbjct 148115 ACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCT 148056
Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646
|| | || ||| || || |||||| ||| || |||||| |||| |
Sbjct 148055 TAGCCAACT-GCACCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTG 147997
Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706
||||| | ||||| | ||| || || ||||| || ||||| |||||
Sbjct 147996 TTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCA 147937
Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766
|||||||| ||||| | ||||| |||||| | ||| ||||||| | ||||| |
Sbjct 147936 AGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGG 147877
Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
|||| || | ||||||||| | |||| |||||
Sbjct 147876 ACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTT 147839
>seq970
Length=57957
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 13458 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 13517
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 13518 CCCACGTCGGGCTCAATTC-CCGTC 13541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027815400116625
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