Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq933 138 2e-27 seq826 118 2e-21 seq1038 107 4e-18 seq501 98.7 2e-15 seq970 87.8 4e-12 >seq933 Length=137956 Score = 138 bits (152), Expect = 2e-27 Identities = 287/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Minus Query 251541 TTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTC 251600 ||| || || | ||||| ||| ||||| || | |||||| |||| ||||| ||| Sbjct 11534 TTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCACCCAGGGAGATATTCTC 11475 Query 251601 CATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGAT 251660 ||| |||||||||||||| | | ||||| |||| | |||||| || || |||| Sbjct 11474 CATAAAGTCGAAGGGGTTGGAAGACTTGTAAACCTTGTCGTTGCCAAGAGCAACCAAGAG 11415 Query 251661 GCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACG 251720 |||||| || || ||||| | ||||| |||||| | ||||||||||||| || Sbjct 11414 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGC 11355 Query 251721 ACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGC 251780 ||||||| ||||| | ||| |||| || | || || || | | || | Sbjct 11354 GCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTTGACGGCATCGACAATGATGTC 11295 Query 251781 CT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAA 251836 || | ||||| | | | | | ||||| || | ||||||||||| | | | Sbjct 11294 CTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGTGGGAGTACAGGAGGCAGGCGA 11239 Query 251837 ACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCA 251896 | | ||||||||||||||| ||| ||||| ||||||||| | ||| || |||| Sbjct 11238 AGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTCAGACCGGGCA 11179 Query 251897 TCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCT 251956 | | || || ||| ||||||||||||| | | |||| ||| ||| | | ||||| Sbjct 11178 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAAATACCCT 11119 Query 251957 CGACA 251961 ||||| Sbjct 11118 CGACA 11114 >seq826 Length=182683 Score = 118 bits (130), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | ||||||||| ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 56939 CTCCCGTATCGCTGTCATTGGCCCCAACGGTGCCGGCAAGTCTACCCTCATCAACGTCCT 56998 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | | || ||||| | | |||| ||||| || || || Sbjct 56999 CACTGGTGAGCTCGTCCCTACCGAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 57058 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||||||| ||||||||||||| ||| || | Sbjct 57059 CTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCTGA 57118 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| || |||| || Sbjct 57119 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 57169 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| ||||| ||||| ||| Sbjct 56124 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTCAAC 56183 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 56184 CAGACTCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 56243 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 56244 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 56302 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 56303 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 56344 Score = 96.9 bits (106), Expect = 7e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| ||||| |||||| ||||| | ||| | | || || Sbjct 57528 CACTCCCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCTGCCTGC 57587 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||| | ||||||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 57588 TCT-TGGCAGCGCCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTCGACCGTGA 57646 >seq1038 Length=43149 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| ||||| |||||||||||| ||||| | | || ||||| || | Sbjct 23075 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGTTGGCCTTGGCCCGTGCCATGCTCAAG 23134 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| |||||||||||||| || || || |||||| ||||| ||||| | ||| Sbjct 23135 GGCGCCGACGTCCTACTGCTTGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCC 23194 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | ||||||| Sbjct 23195 TGGCTCGAGACCTACCT 23211 >seq501 Length=177797 Score = 98.7 bits (108), Expect = 2e-15 Identities = 448/698 (64%), Gaps = 13/698 (2%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| |||| ||||||||||| || ||||| | | | || || | || Sbjct 148531 CTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGTACAACGGTACGCTGGGA 148472 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||| ||||| |||||||||| |||||| || || | | ||||| | ||||| Sbjct 148471 GATTTCCCAAACAGTCTTGTACAATGCCTTCACCTCGGTAGGAATGTTGGGGATGTTCTG 148412 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 |||||| || | |||||| || |||||||||| | |||||||| || |||| | Sbjct 148411 GATAGAACCGTTCTCGGCAATGATACGGTTCTTCATAGCATCGGACCACAGACCCATG-T 148353 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | ||| || | || ||| |||||| || | ||||| ||||| || |||| Sbjct 148352 CGACGAGGTCCTTCAAGAGCCAAGGGTTGACGACTTGAAACTCGCCAGCAAGGACACGAC 148293 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||||||||| || ||| ||| ||| |||| || | ||||||| | Sbjct 148292 GTTGGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGG 148233 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCG-TCAGAGAGTTCCTCACACC---CTTCTTGACA 293469 | || || ||||| | || | || ||||||||| | ||||| || ||||| Sbjct 148232 TGCTGGCAGTCGGCATGGGCGC-GACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATC 148174 Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527 || | ||| | |||||| |||||| || || || ||||| ||| | | | Sbjct 148173 TGCTCCTTCAGAGCGTCCCAGTCCCAGAG--ATCCGAGGGCTTAACATTCCACATGTCGT 148116 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||| | || |||| |||| || ||||| | || | | ||| || | ||| | Sbjct 148115 ACTGGAGAATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCT 148056 Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 || | || ||| || || |||||| ||| || |||||| |||| | Sbjct 148055 TAGCCAACT-GCACCGACATAGTAAGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTG 147997 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 ||||| | ||||| | ||| || || ||||| || ||||| ||||| Sbjct 147996 TTGAGGTCACGAGCTTCAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCA 147937 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766 |||||||| ||||| | ||||| |||||| | ||| ||||||| | ||||| | Sbjct 147936 AGACCCTGCACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGG 147877 Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 |||| || | ||||||||| | |||| ||||| Sbjct 147876 ACCGGGTAGTGGTTGACATCAATGATTCTGTTGAGGTT 147839 >seq970 Length=57957 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 13458 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 13517 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 13518 CCCACGTCGGGCTCAATTC-CCGTC 13541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027815400116625