Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 172 1e-37
seq1539 158 2e-33
seq826 154 3e-32
seq933 134 3e-26
seq1519 123 5e-23
seq1038 93.3 8e-14
>seq1045
Length=66817
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||| ||| || |||||||| || |||||||| || |||||
Sbjct 49739 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 49798
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || |||||||| ||
Sbjct 49799 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 49858
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 49859 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 49918
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || |||||||||||||| ||||| |||||||| ||
Sbjct 49919 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 49968
>seq1539
Length=122776
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | ||| || || ||||| || || ||||| || || ||
Sbjct 51048 CCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 50989
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | |||||||| | |||||| |||||||| || | | || |||||||| |||
Sbjct 50988 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGA 50929
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||| ||| ||||| ||||| | |||||| ||
Sbjct 50928 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACC 50869
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| || ||||| || | ||||||||||| ||||||||
Sbjct 50868 TCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822
Score = 143 bits (158), Expect = 5e-29
Identities = 162/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || ||||| || ||||||||||| || || |||
Sbjct 50820 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAG 50761
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || | | ||| || || || ||
Sbjct 50760 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGATCAGGAGGG 50701
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| |||||||| | |||||| |||||||| || | || || ||
Sbjct 50700 ATGCCTTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATGGTATCAGAGGACTCAACC 50641
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | |||||||| || || || |||||||||||||
Sbjct 50640 TCGAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGA 50604
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| ||||| ||||| || |||||||| ||||||
Sbjct 51276 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCGCTC 51217
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || || ||||| || || || ||||| | || || || || ||
Sbjct 51216 AGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGGGG 51157
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||| | ||| || || || ||||| | || || ||
Sbjct 51156 ATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCAACC 51097
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || ||||| || | ||||||||||| || |||||
Sbjct 51096 TCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050
>seq826
Length=182683
Score = 154 bits (170), Expect = 3e-32
Identities = 672/1042 (64%), Gaps = 52/1042 (5%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||||||| ||||||||||||| || || ||| ||||||
Sbjct 57133 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 57074
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | || || ||
Sbjct 57073 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTAGGG 57014
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
| || || || |||||||| |||||||| |||| |||||| ||||| |||||||||||
Sbjct 57013 ACGAGC-TCACCAGTGAGGACGTTGATGAGGGTAGACTTGCCGGCACCGTTGGGGCCAAT 56955
Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTGC---GAGTTCACGTTG--CTGAAGATCTC 225213
|| | || ||||| | | | | | ||| ||| | | | | |||| | | |
Sbjct 56954 GACAGCGATACGGGA-GCCGAGGGAGCACTGGAAAGAGATGTCCTGGATCTGAGGCTTGC 56896
Query 225214 AGGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGTC 225267
|| | | |||| |||| || | ||||||| ||| || | |
Sbjct 56895 TGGTACCGG--GGTACTGGAAGGACATCTTGCTGGCACGCAG------GATAGCCTTGGC 56844
Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327
||||| | | |||||| ||||| |||||||||||||| ||| || | | |||
Sbjct 56843 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAGTC 56784
Query 225328 CTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384
| || ||||||||||| ||||| || || ||| ||||| | |||||
Sbjct 56783 GCTGAGCTCGTAGTAAGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGGTT 56727
Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443
|| ||| | ||||||||| | || |||| || ||||| ||| | ||| ||
Sbjct 56726 ACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGT 56671
Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTG 225502
||| |||||| ||||||||||||| || |||||||||| || | || |||
Sbjct 56670 TGTCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGACGTGCAAG-------GGGAGTTG 56618
Query 225503 ---AGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558
|||| || | |||||| ||||| | ||||||| |||||| ||||| |||||
Sbjct 56617 CAAAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTC 56559
Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618
||||||||||| || | | || || ||| || || | |||||||| |||||
Sbjct 56558 GAGAAGCAGGATATCGGGGGCCTCGAAGACGGCACGGCACAGGGCGAGCTTCATCTTCCA 56499
Query 225619 GCCCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAG 225678
|| || || |||| ||| | | | | | ||| |||||| ||||
Sbjct 56498 ACCACCAGAAAGGGCAGAGATCTCACCCTTGACCATGTTCTCGGTGAAGCCGAACTCGTT 56439
Query 225679 GAGCGT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACG 225734
||| | || || | || ||||| || | | |||| | | | | | |
Sbjct 56438 CAGCTTGGCCTCGACGTCGGCCT-GGGAGGTCTCGACACCGGCGTCCTGGAGCTTCTTCA 56380
Query 225735 AGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACA 225794
| | || |||||| || | | ||| | ||||| |||||| || ||| | |
Sbjct 56379 TGGTCCAGTCGATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGA 56320
Query 225795 CCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGA 225854
| ||| || || || | |||||| ||||| | ||| | || || ||||| |
Sbjct 56319 CGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCA 56260
Query 225855 GCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGA 225914
||||| |||||| | |||||||||||| || ||||| | | || |||||||
Sbjct 56259 TGAGGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGA 56200
Query 225915 TGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAAT 225974
|||| | || ||| || ||||||||| |||| ||||| |||||||| ||| |
Sbjct 56199 GACGGAGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGCAGT 56140
Query 225975 CGCACAGGTCCTCACCCTCCTC 225996
||| |||||||||||||||||
Sbjct 56139 TGCAAAGGTCCTCACCCTCCTC 56118
>seq933
Length=137956
Score = 134 bits (148), Expect = 3e-26
Identities = 322/480 (67%), Gaps = 18/480 (4%)
Strand=Plus/Minus
Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992
||||| ||||| ||||| ||||| || | || || || |||||||||| ||||||
Sbjct 11551 TTCATAACGCCGGCCTTTTGGTAGTCGGCAACACGCTTTTCAAAGAAGTTGGTCTTGCCA 11492
Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGG 10048
| ||||| || |||||| ||||| |||||||| | | | |||| ||||
Sbjct 11491 CCCAGGGAGATATTCTCCATAAAGTCGAAGGGGTTG--GAAGACTTGTAAAC--CTTGTC 11436
Query 10049 GTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTC 10108
|| || || || || | |||||| || |||||||| |||||||| |||||||||
Sbjct 11435 GTTGCCAAGAGCAACCAAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGTT 11376
Query 10109 CGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGC 10168
||||||||||||| || | ||| || | ||| || | ||| |||| || |
Sbjct 11375 GGAGTTCATGCCAAGCAGGGCGCAAGGAAGGGCCTCCGTCAGGAACTCCTGCTCAATCTT 11316
Query 10169 GACCGCTTCCTCGACGATG--CTCTTTA--CCACGTCAAGGGACAGCTTGTTCTCGAGCT 10224
||| || || | | |||| ||| || | | | ||| | ||||| ||| |
Sbjct 11315 GACGGCATCGACAATGATGTCCTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGT 11260
Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284
|| |||||||| | || | ||| || |||||||| || ||||| |||||
Sbjct 11259 GGGAGTACAGGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGT 11200
Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACG 10344
|||| || ||||||||||||||| || || || |||||||| |||| | ||| |
Sbjct 11199 TGGAGAATGTCAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGG 11140
Query 10345 ACCCGGAGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAG 10403
|| ||| | || |||||| || ||| | |||| || | |||| |||||||||
Sbjct 11139 CACCACTGAAGAAAATACCCTCGACAGCA-GCGAAGGCAACCAAACGCTGAGCGAAGGAG 11081
>seq1519
Length=130405
Score = 123 bits (136), Expect = 5e-23
Identities = 219/314 (70%), Gaps = 4/314 (1%)
Strand=Plus/Plus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| |||||||| || || |||||||||||| || || || || | || || | |
Sbjct 50399 CCAGTGTGGACATCTTCTGAGAAGCCAATCTCGGCCGTTCCACCCACTTCGACGAGAGAC 50458
Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACA-CGGCGCCGCCAAAGGTGTCGCGAGA 59415
|| || ||||||| ||| | ||||| || | | ||| || | | || |||
Sbjct 50459 TCGCGACGGTAGAGCGCGTTGCTTCCGACACAGATAGACGCTCCCCATCG-GTTGCGGTT 50517
Query 59416 AACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGT 59475
||||||| || |||||| ||||| ||||| || || || | |||||||||| ||
Sbjct 50518 TACCTGGACGACACGGTAAAACAGCTCCTGTGTGGCACCGGCGCCCTGCTCAACCCACGT 50577
Query 59476 CTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATG 59535
||||||| | ||| |||| |||||||| |||| |||| || ||||| ||||| |
Sbjct 50578 CTGGTCGTCGGTAACACGGAAGTACTGGGGGCTCTGAACAAGGGCCGTCTTGTCGTCA-G 50636
Query 59536 GGAAAAG-TAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGA 59594
||| | | ||| | |||||||| |||| |||||||| || ||||| || ||||
Sbjct 50637 CCAAATGCTCCACCATCAGCTCCTTGAGAAAGTCGGGGCGCGGGCAAAAGTCGGCGTCGA 50696
Query 59595 AGATGGCAAAGAAG 59608
| ||||| ||||||
Sbjct 50697 AAATGGCGAAGAAG 50710
>seq1038
Length=43149
Score = 93.3 bits (102), Expect = 8e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| ||||| || ||||||||||| || || | | | | | | || ||||||
Sbjct 23269 GTCGAGGAAACCGGAGTCGTGGGAAACGATCAAGCTGGTAATCTCGGGGTGGGTCTTGAG 23210
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| || |||||| || | |||| ||||||| |||||| ||||||||||| || ||
Sbjct 23209 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCAAGCAG 23150
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
|||| ||| || | |||| ||||| || | | | || |||||| ||||| || ||
Sbjct 23149 TAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAAGGCCAACTTCATCTTCCATCCACC 23090
Query 225625 GGACAGGGAGCCGA 225638
||||| |||||||
Sbjct 23089 AGACAGAGAGCCGA 23076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921603679545000
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