Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq501 361 1e-94 seq933 244 2e-59 >seq501 Length=177797 Score = 361 bits (400), Expect = 1e-94 Identities = 913/1373 (66%), Gaps = 49/1373 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || || |||||||| || | || || || || ||||| | |||| | || || Sbjct 148327 GTTGACGACTTGAAACTCGCCAGCAAGGACACGACGTTGGTAAATGTTGGAGGTGTAGGG 148268 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| ||||||||| ||||| | ||||| |||||||||||||||| || Sbjct 148267 CTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGAC 148208 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267 |||||| ||| | || |||||| || ||| || || |||| || ||||||| Sbjct 148207 GAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGC--GTCCCAGTCC 148150 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | ||||| | | | | || ||||||||| |||| || | |||| Sbjct 148149 CAGAGATCCGAGGGCT--TAACATT-------CCACATGTCGTACTGGAGAATGCCCTGA 148099 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCT 244386 || ||| |||||||| ||| |||||||||| || || |||| || || | Sbjct 148098 GAAACAGGGGAACCCTCGTACGTCTGGTAGGGACCCTCCTCCTTAGCCAACTGCACCGAC 148039 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 | || ||||| || | |||||| |||||||| ||| ||||||| | ||| || || | Sbjct 148038 ATAGTA-AGGGCAGCATGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTT- 147981 Query 244447 GCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || |||||| |||| | || |||| | || || || |||||||| ||| Sbjct 147980 -CAGGAGACTCGAAGGGCATGCGGAGAGCCAAGAAGGCATCCGCAAGACCCTGCACACCG 147922 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 | || ||||| | ||| ||| ||||| | ||| || | || ||||| |||| Sbjct 147921 AGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACCGGGTAGTGGTTG 147862 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 | || || | ||||||||||||| || | || ||| ||| ||| ||| Sbjct 147861 ACATCAATGATTCTGTTGAGGTTGCGAACGACAACCTGGGTGACCTCGTGGAGCTTCTGG 147802 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 |||||||| | | ||||| | | || | || || | | ||| | Sbjct 147801 AAGTCGTAGAC------ACCCTCGTTG-TAGTCA-----ACGAATGTGGGCAAGGCAAGC 147754 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||||||| || || || ||||| || | || ||||| | ||||| |||||| Sbjct 147753 GAGGCCAGGTTACACACAGCGACCTCGTCAGGCGCGGAGTACTCAATGATCTCAGTGCAG 147694 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| || |||||| ||||||| || || ||| ||| |||| || ||| Sbjct 147693 AGGTTGGAGCTACGGATGGTACCCAGGTTCTTCTGGTTGCTTTTGCGGTTGGCAGCATCC 147634 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||||||||||||||| || |||||| || || |||||| | | |||||| Sbjct 147633 TTGTAGAGCATGAAGGGGTTGCCTGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGC 147574 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGGC 244923 | ||||| | ||| ||||| |||||||| |||| ||||| ||| | ||| Sbjct 147573 TTTTGGGCCTTAAGAGTCTTGCGACCCTTGCCCATCTGT-TCGTACTTCTCGTATAAGGC 147515 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||||||||| || || ||| | || || |||||| |||||||| ||| | Sbjct 147514 CTCGAACTCCTCACCGTAGCAGTCGGCAAGACCAGGGCACTCATTGGGGCACATAAGAGT 147455 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || ||| | | || |||| ||||||||| || |||||||| || || |||| Sbjct 147454 CCAGTCTCCGTTCTTTTCTACTCTCTTCATGAAGAGATCAGGGATCCAAAGAGCAAGGAA 147395 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | || | ||| ||| |||| |||||||| ||| || |||||||| || Sbjct 147394 AAGGTCACGGGCGCGGACCTCTTCCTTGCCATGGTTCTTCCGCAGATCTAAAAAGTCGAA 147335 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| ||| ||||||| ||||| | |||| || | || ||||| ||||||||||| || Sbjct 147334 GACATCGGCGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCGGGACGCTTGTTGCCACC 147275 Query 245164 CTGGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||| | | | ||||| | | || |||| || || | || || || |||| Sbjct 147274 CTGGTCGA----CGTACCGAGCAGTGTTATTAAAGACACGGAGCATGGGAACGATACCGT 147219 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC- 245278 | ||| ||| |||||||| ||||| | ||| | | | || ||| | ||||| Sbjct 147218 TGGAGGTGCCATTGGTGCCGGCAATGTAAGAGCCGGTAGC---GCGGATGC-GGTGGACG 147163 Query 245279 ---ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 | || | || || || ||||||||| | |||||| |||||| |||||| Sbjct 147162 TTGAGACCAATGCCACCAGCCATCTTGGAGATCATTGCGCAGGTCTTGAGGGTGTCGTAA 147103 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || ||||| || |||| ||||||| || || ||||| || |||||||| | | | Sbjct 147102 ATACCCTCGATAGAGTCCTCTTTCATGTCGACAAGGAAGCAAGAAGACAGCTGTGCTTGG 147043 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 ||| | | | |||||| || || || |||||| || ||| | |||||| Sbjct 147042 GGGGTACCAGCGTTGAAGAGTGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGA 146990 >seq933 Length=137956 Score = 244 bits (270), Expect = 2e-59 Identities = 363/508 (71%), Gaps = 19/508 (4%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAG 42703 |||||||| |||||||| ||||| ||||| || | || | | | |||| || | Sbjct 11037 AAGAAGGCCGACTGGGCCCTCAAGTGGATT-AGCGATGAGAAGTCCTCCTTCGCTCAGCG 11095 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||| ||||| | || |||||||| || |||||| || ||||||||||||||||| Sbjct 11096 TTTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGTGGTGCCTTCGCCTCCATCTT 11155 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| || || || |||||||| || || ||||| ||||| |||||| Sbjct 11156 CTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGTCTGACATTCTCCAACGAGCTCATCTCTC 11214 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| ||||| | ||||| ||||||||||||| ||| |||||||| | || Sbjct 11215 GTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCCTGTACTC---CCACCTCAAGAACC 11271 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| ||| || || || |||||| || ||||| |||| ||| |||||| Sbjct 11272 GCCCCAGCAAGCAGGTTATCGAGGACATCATTGTCGATGCCGTCAAGATTGAGCAGGAGT 11331 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 |||| ||| || | || || ||||| | ||||||||| | |||| ||| ||| Sbjct 11332 TCCTGACGGAGGCCCTTCCTTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGT 11391 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCT 43056 |||| ||| ||||||||||| ||| | | | | ||| || || | | | Sbjct 11392 ACATTGAGTTCGTCGCCGACCGCCTCTT------GGTTGCTCTTGGCAACGACAAGGTTT 11445 Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116 |||| | | ||||||||||||||||||||| ||||| ||| ||||||||||||| Sbjct 11446 ACAAGTCTTCCAACCCCTTCGACTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACT 11505 Query 43117 TTTTCGAGAAGCGCGTCGCCGACTACCA 43144 | || || ||||| || ||||||||||| Sbjct 11506 TCTTTGAAAAGCGTGTTGCCGACTACCA 11533 Score = 143 bits (158), Expect = 5e-29 Identities = 237/336 (71%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || || ||||||||| ||||||||||| ||| Sbjct 10630 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATTGATCTG 10689 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTC--TGAGAACGAAAAGTTTTTCCTCAAA 42416 | |||||| | || |||| | || || |||| | || |||| ||| || Sbjct 10690 TCTAAGGACCTGCACGACTGGAACAACAAGATCAATGAGGATGAGAAGTACTTCATCTCG 10749 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || |||||||| |||||||||||| ||| | | Sbjct 10750 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 10809 Query 42477 TTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| | ||| | |||||| ||||||||||||||||||||||| || Sbjct 10810 TTCAGCGGCGAGGTTCAAGTGC-CTGAGGCCCGCTGCTTCTACGGCTTCCAGATTATGAT 10868 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| || Sbjct 10869 GGAGAACATCCACTCCGAGACTTACTC---GCTGCTCATTGACACCTACATCAAGGAGCC 10925 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | | || | || ||||| ||||| || || Sbjct 10926 GGCCCAACGCACGTACCTCTTCAACGCCATTGACAC 10961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944320018110000