Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1539 87.8 1e-12 seq1045 84.2 2e-11 >seq1539 Length=122776 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || || || |||||||| ||||||||| ||||||||||| || Sbjct 51277 ACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATC-GC 51219 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || || |||| ||||||||||| || ||||| || || ||||||||||| | Sbjct 51218 TCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGG 51159 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAA---TGGAACTCACACTATCAGTAGATT 34075 | | || ||| ||||| || || ||||| || | || | || | ||| | Sbjct 51158 GGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATC---GTGTCCGAAGACT 51102 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | ||| ||||| ||||| || | || || || ||||||||||| Sbjct 51101 CAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050 >seq1045 Length=66817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || || ||| ||||||||| |||||||| || | Sbjct 49738 ACCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 49797 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| || | ||||| ||||| || |||||||||||||| || || Sbjct 49798 CAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 49857 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 49858 GATGCCCTCCTTGTCC 49873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397054536303250