Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 87.8 1e-12
seq1045 84.2 2e-11
>seq1539
Length=122776
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| || || || || |||||||| ||||||||| ||||||||||| ||
Sbjct 51277 ACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATC-GC 51219
Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
| || || |||| ||||||||||| || ||||| || || ||||||||||| |
Sbjct 51218 TCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGGG 51159
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAA---TGGAACTCACACTATCAGTAGATT 34075
| | || ||| ||||| || || ||||| || | || | || | ||| |
Sbjct 51158 GGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATC---GTGTCCGAAGACT 51102
Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
| || | ||| ||||| ||||| || | || || || |||||||||||
Sbjct 51101 CAACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050
>seq1045
Length=66817
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| ||||||||||| || || ||| ||||||||| |||||||| || |
Sbjct 49738 ACCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 49797
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| || |||| || | ||||| ||||| || |||||||||||||| || ||
Sbjct 49798 CAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 49857
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 49858 GATGCCCTCCTTGTCC 49873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397054536303250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |