Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1045 113 1e-19 seq1539 104 6e-17 seq926 91.5 3e-13 >seq1045 Length=66817 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || ||||||| Sbjct 49739 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 49798 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| ||||||||||| ||||| || ||| Sbjct 49799 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 49858 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | ||| ||| || || Sbjct 49859 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 49918 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| ||||| || || || ||||| ||||| |||||||| || Sbjct 49919 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 49968 >seq1539 Length=122776 Score = 104 bits (114), Expect = 6e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | || ||||| |||| ||| || || ||||| || || ||| Sbjct 51279 TGACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCG 51220 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || ||||| ||||| || ||||| ||||| || || || |||||||| ||| | Sbjct 51219 CTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGG 51160 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || || ||||| |||| || || || || || | || || || Sbjct 51159 GGGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCA 51100 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||| || ||||| || |||| ||||||||||| || ||||| Sbjct 51099 ACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || |||| || || || || || || ||||| | Sbjct 51048 CCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 50989 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | || ||||| ||||| |||| |||||| || || Sbjct 50988 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGA 50929 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | |||||||| || || | || ||||| || Sbjct 50928 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACC 50869 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| || |||| ||||||||||| |||||||| Sbjct 50868 TCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822 >seq926 Length=149626 Score = 91.5 bits (100), Expect = 3e-13 Identities = 200/290 (69%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 325963 TACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTT-CTAGAAGATTAGGGAAAC 326021 |||||| || |||||||||| | ||||| | || |||| | | || | || | Sbjct 81090 TACGATGGGAGTGATGAACTCCCGGAAGAAGTCGGGGATTTGCAACAAAGATGGGTACTG 81149 Query 326022 AGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 326081 | || || || ||||| |||| ||||| || |||| ||||| |||| |||| Sbjct 81150 AACT-TGCAAGAAGTTTATGAGAAGACCCTTGATATGAGAACCGTCGTGATCCTGATCGG 81208 Query 326082 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTT--TACCGGT 326139 ||||||||||| ||||||||| || || || || |||| || | | | | Sbjct 81209 CCATGATCATCAGATGACCGTAGCGTAGACTCTTTGTATCCGTGTAGACCTGCTTGTGCT 81268 Query 326140 TTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CC 326197 || |||||||| | || |||| | ||| |||||| | |||||||||||| || | | Sbjct 81269 TT--AGGCCGAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTCGTGAT-CTGGTCG 81324 Query 326198 ACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCC 326247 | ||||| || |||||||| || | || |||||||| ||||| ||||| Sbjct 81325 ATCGATGCGTCACGGACGTTTAACATCTTACCACGAAGGGGGAAGACTCC 81374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179629839226750