Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014-
05-27] 1,625 sequences; 46,755,813 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1045 113 1e-19
seq1539 104 6e-17
seq926 91.5 3e-13
>seq1045
Length=66817
Score = 113 bits (124), Expect = 1e-19
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||| || || ||||| || |||||||
Sbjct 49739 CCACCACGCAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 49798
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || ||||| ||||||||||| ||||| || |||
Sbjct 49799 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 49858
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| ||| || ||
Sbjct 49859 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 49918
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || ||||| ||||| || || || ||||| ||||| |||||||| ||
Sbjct 49919 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGAT 49968
>seq1539
Length=122776
Score = 104 bits (114), Expect = 6e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || || || | || ||||| |||| ||| || || ||||| || || |||
Sbjct 51279 TGACCGCCACGCAGACGGAGGACGAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAATCG 51220
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
|| ||||| ||||| || ||||| ||||| || || || |||||||| ||| |
Sbjct 51219 CTCAGGGTGCGACCGTCCTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGATCAGGG 51160
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || || ||||| |||| || || || || || | || || ||
Sbjct 51159 GGGATGCCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCAATCGTGTCCGAAGACTCA 51100
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||| || ||||| || |||| ||||||||||| || |||||
Sbjct 51099 ACCTCCAACGTAATTGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 51050
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || | ||| || || |||| || || || || || || ||||| |
Sbjct 51048 CCTCCACGCAGACGAAGGACAAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAC 50989
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| | || ||||| ||||| |||| |||||| || ||
Sbjct 50988 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGAGGA 50929
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | |||||||| || || | || ||||| ||
Sbjct 50928 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATCGTGTCCGATGATTCGACC 50869
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| |||||||| ||||| || |||| ||||||||||| ||||||||
Sbjct 50868 TCCAGCGTGATTGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 50822
>seq926
Length=149626
Score = 91.5 bits (100), Expect = 3e-13
Identities = 200/290 (69%), Gaps = 10/290 (3%)
Strand=Plus/Plus
Query 325963 TACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTT-CTAGAAGATTAGGGAAAC 326021
|||||| || |||||||||| | ||||| | || |||| | | || | || |
Sbjct 81090 TACGATGGGAGTGATGAACTCCCGGAAGAAGTCGGGGATTTGCAACAAAGATGGGTACTG 81149
Query 326022 AGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 326081
| || || || ||||| |||| ||||| || |||| ||||| |||| ||||
Sbjct 81150 AACT-TGCAAGAAGTTTATGAGAAGACCCTTGATATGAGAACCGTCGTGATCCTGATCGG 81208
Query 326082 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTT--TACCGGT 326139
||||||||||| ||||||||| || || || || |||| || | | | |
Sbjct 81209 CCATGATCATCAGATGACCGTAGCGTAGACTCTTTGTATCCGTGTAGACCTGCTTGTGCT 81268
Query 326140 TTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CC 326197
|| |||||||| | || |||| | ||| |||||| | |||||||||||| || | |
Sbjct 81269 TT--AGGCCGAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTCGTGAT-CTGGTCG 81324
Query 326198 ACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCC 326247
| ||||| || |||||||| || | || |||||||| ||||| |||||
Sbjct 81325 ATCGATGCGTCACGGACGTTTAACATCTTACCACGAAGGGGGAAGACTCC 81374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179629839226750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |